| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_19025 | | LysR family transcriptional regulator | 1.0 | CSW01_01710 | | Rsd/AlgQ family anti-sigma factor | 0.46 | 13 |
| Alteromonas macleodii MIT1002 | 0.76 | MIT1002_03329 | | D-malate degradation protein R | 0.32 | MIT1002_03798 | | Regulator of sigma D | low | > 70 |
| Serratia liquefaciens MT49 | 0.55 | IAI46_20610 | | LysR family transcriptional regulator | 0.32 | IAI46_01325 | | Rsd/AlgQ family anti-sigma factor | low | > 86 |
| Shewanella oneidensis MR-1 | 0.38 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.39 | SO0433 | rsd | regulator of sigma D (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | 0.38 | Shewana3_0434 | | anti-RNA polymerase sigma 70 factor (RefSeq) | low | > 73 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS18050 | | LysR family transcriptional regulator | 0.21 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS18050 | | LysR family transcriptional regulator | 0.21 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_2951 | | transcriptional regulator, LysR family | 0.24 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_2951 | | transcriptional regulator, LysR family | 0.24 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | 0.22 | Pf1N1B4_2190 | | Regulator of sigma D | low | > 87 |
| Pseudomonas putida KT2440 | 0.32 | PP_3811 | | Transcriptional regulator, LysR family | 0.22 | PP_0191 | | Transcriptional regulatory protein AlgQ | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | 0.24 | Pf6N2E2_4435 | | Regulator of sigma D | low | > 103 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_16085 | | LysR family transcriptional regulator | 0.21 | PS417_27505 | | transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.32 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | 0.23 | PfGW456L13_861 | | Regulator of sigma D | low | > 87 |
| Pseudomonas sp. DMC3 | 0.32 | GFF943 | | HTH-type transcriptional regulator DmlR | 0.25 | GFF353 | | Regulator of sigma D | low | > 89 |
| Pseudomonas sp. BP01 | 0.32 | JOY50_RS04745 | | LysR family transcriptional regulator | 0.22 | JOY50_RS18725 | | Rsd/AlgQ family anti-sigma factor | low | > 84 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_21990 | | LysR family transcriptional regulator | 0.24 | AO356_12810 | | transcriptional regulator | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_2163 | | Transcriptional regulator | 0.25 | Psest_3743 | | Regulator of sigma D | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.31 | IKLFDK_11955 | | LysR family transcriptional regulator | 0.26 | IKLFDK_27180 | | Alginate regulatory protein AlgQ | low | > 101 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_22295 | | LysR family transcriptional regulator | 0.22 | AO353_08965 | | transcriptional regulator | low | > 101 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | 0.26 | OH686_13925 | | Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD | low | > 80 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_936 | | transcriptional regulator, LysR family protein | 0.30 | HP15_221 | | anti-RNA polymerase sigma 70 factor | low | > 73 |
| Rahnella sp. WP5 | 0.30 | EX31_RS16730 | | LysR family transcriptional regulator | 0.29 | EX31_RS16820 | | Rsd/AlgQ family anti-sigma factor | low | > 89 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_00531 | | HTH-type transcriptional regulator DmlR | 0.23 | PFR28_04361 | | Regulator of sigma D | low | > 88 |
| Pantoea sp. MT58 | 0.28 | IAI47_20580 | | LysR family transcriptional regulator | 0.31 | IAI47_18080 | | Rsd/AlgQ family anti-sigma factor | low | > 76 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS27965 | | LysR family transcriptional regulator | 0.28 | BWI76_RS01560 | | Rsd/AlgQ family anti-sigma factor | low | > 92 |
| Dickeya dianthicola 67-19 | 0.26 | HGI48_RS19010 | | LysR family transcriptional regulator | 0.20 | HGI48_RS01175 | | sigma D regulator | low | > 71 |
| Erwinia amylovora T8 | 0.25 | OLJFJH_06945 | | HTH-type transcriptional activator AaeR | 0.25 | OLJFJH_06745 | | sigma D regulator | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.25 | GFF2141 | | LysR family transcriptional regulator QseA | 0.29 | GFF4197 | | Regulator of sigma D | low | > 78 |
| Escherichia coli ECRC62 | 0.25 | BNILDI_03360 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | 0.29 | BNILDI_06010 | rsd | sigma D regulator | 0.75 | 6 |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS20140 | | LysR family transcriptional regulator | 0.29 | ECOLIN_RS23045 | | sigma D regulator | low | > 55 |
| Escherichia coli ECOR27 | 0.25 | NOLOHH_08195 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | 0.29 | NOLOHH_05515 | rsd | sigma D regulator | low | > 75 |
| Escherichia coli BL21 | 0.25 | ECD_03369 | | LysR family putative transcriptional regulator | 0.29 | ECD_03872 | | stationary phase protein, binds sigma 70 RNA polymerase subunit | low | > 61 |
| Escherichia coli BW25113 | 0.25 | b3521 | yhjC | predicted DNA-binding transcriptional regulator (RefSeq) | 0.29 | b3995 | rsd | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.25 | EFB2_00287 | | HTH-type transcriptional regulator DmlR | 0.29 | EFB2_04616 | | Regulator of sigma D | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.25 | OHPLBJKB_00181 | | HTH-type transcriptional regulator DmlR | 0.29 | OHPLBJKB_04055 | | Regulator of sigma D | low | > 73 |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_15135 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | 0.29 | HEPCGN_12005 | rsd | sigma D regulator | low | > 87 |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_21385 | aaeR | HTH-type transcriptional activator AaeR | 0.29 | JDDGAC_16995 | rsd | sigma D regulator | low | > 86 |
| Escherichia coli ECRC100 | 0.25 | OKFHMN_17760 | aaeR | HTH-type transcriptional activator AaeR | 0.29 | OKFHMN_13370 | rsd | sigma D regulator | low | > 80 |
| Escherichia coli ECRC101 | 0.25 | MCAODC_08280 | aaeR | HTH-type transcriptional activator AaeR | 0.29 | MCAODC_03870 | rsd | sigma D regulator | low | > 87 |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_10390 | aaeR | HTH-type transcriptional activator AaeR | 0.29 | KEDOAH_14790 | rsd | sigma D regulator | — | — |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_15520 | aaeR | HTH-type transcriptional activator AaeR | 0.29 | NIAGMN_11120 | rsd | sigma D regulator | — | — |
Not shown: 26 genomes with orthologs for CSW01_19025 only; 9 genomes with orthologs for CSW01_01710 only