Conservation of cofitness between CSW01_15345 and CSW01_01280 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_15345 XRE family transcriptional regulator 1.0 CSW01_01280 GDP-mannose 4,6-dehydratase 0.76 15
Dinoroseobacter shibae DFL-12 0.59 Dshi_1555 transcriptional regulator, XRE family (RefSeq) 0.63 Dshi_4139 GDP-mannose 4,6-dehydratase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.55 PGA1_c14960 putative transcriptional regulator 0.81 PGA1_65p00310 GDP-mannose 4,6-dehydratase Gmd low > 62
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS33425 transcriptional regulator 0.69 BPHYT_RS04000 GDP-mannose 4,6-dehydratase low > 109
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS14815 XRE family transcriptional regulator 0.70 QEN71_RS26360 GDP-mannose 4,6-dehydratase low > 153
Paraburkholderia graminis OAS925 0.45 ABIE53_004924 transcriptional regulator with XRE-family HTH domain 0.68 ABIE53_000940 GDPmannose 4,6-dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_03868 transcriptional regulator, XRE family with cupin sensor 0.69 H281DRAFT_04776 GDPmannose 4,6-dehydratase low > 103
Azospirillum brasilense Sp245 0.39 AZOBR_RS27045 XRE family transcriptional regulator 0.44 AZOBR_RS33465 GDP-mannose 4 6-dehydratase low > 97
Azospirillum sp. SherDot2 0.38 MPMX19_05211 hypothetical protein 0.63 MPMX19_06644 GDP-mannose 4,6-dehydratase 0.35 17
Castellaniella sp019104865 MT123 0.38 ABCV34_RS09100 XRE family transcriptional regulator 0.71 ABCV34_RS12935 GDP-mannose 4,6-dehydratase — —
Ralstonia solanacearum PSI07 0.29 RPSI07_RS07485 XRE family transcriptional regulator 0.47 RPSI07_RS19840 GDP-mannose 4,6-dehydratase low > 81
Pseudomonas putida KT2440 0.22 PP_2245 Transcriptional regulator, Cro/CI family 0.46 PP_1799 GDP-mannose 4,6-dehydratase low > 96
Pseudomonas sp. SVBP6 0.21 COO64_RS09605 helix-turn-helix domain-containing protein 0.45 COO64_RS06615 gmd GDP-mannose 4,6-dehydratase low > 93
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_06745 DNA-binding protein 0.40 AO356_11835 GDP-mannose 4,6-dehydratase low > 104
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_3201 Transcriptional regulator, MerR family 0.40 Pf6N2E2_4242 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 103
Pseudomonas lactucae CFBP13502 0.17 GEMAOFIL_03889 HTH-type transcriptional regulator SutR 0.46 GEMAOFIL_04278 GDP-mannose 4,6-dehydratase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.17 BT2783 transcriptional regulator (NCBI ptt file) 0.60 BT1224 GDP-mannose 4,6-dehydratase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.16 BACOVA_01081 hypothetical protein 0.60 BACOVA_00511 GDP-mannose 4,6-dehydratase low > 96
Bacteroides stercoris CC31F 0.16 HMPREF1181_RS01200 helix-turn-helix transcriptional regulator 0.60 HMPREF1181_RS12530 GDP-mannose 4,6-dehydratase low > 56
Pseudomonas fluorescens SBW25 0.15 PFLU_RS06955 helix-turn-helix domain-containing protein 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS06955 helix-turn-helix domain-containing protein 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase low > 109
Enterobacter asburiae PDN3 0.15 EX28DRAFT_1500 Predicted transcriptional regulators 0.83 EX28DRAFT_0502 GDP-mannose 4,6-dehydratase low > 76
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4551 Transcriptional regulator, MerR family 0.40 PfGW456L13_2338 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 87
Pseudomonas aeruginosa PA14 0.15 IKLFDK_24455 DNA-binding protein 0.39 IKLFDK_26150 GDP-mannose 4 6-dehydratase low > 98
Pseudomonas aeruginosa MRSN321 0.15 DY961_RS27395 XRE family transcriptional regulator 0.39 DY961_RS25555 gmd;go_function=GDP-mannose GDP-mannose 4 6-dehydratase low > 100
Pseudomonas aeruginosa PUPa3 0.15 DQ20_RS31945 XRE family transcriptional regulator 0.39 DQ20_RS58005 gmd;go_function=GDP-mannose GDP-mannose 4 6-dehydratase low > 101
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS17570 XRE family transcriptional regulator 0.63 HMPREF1078_RS00185 GDP-mannose 4,6-dehydratase low > 61
Pseudomonas segetis P6 0.14 MPMX49_00005 HTH-type transcriptional regulator PuuR 0.43 MPMX49_00388 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli ECRC99 0.14 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.83 KEDOAH_03710 GDP-mannose 4,6-dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.10 OHPLBJKB_04266 dTDP-glucose 4,6-dehydratase 2 low > 74
Escherichia coli ECRC100 0.14 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.83 OKFHMN_24440 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC62 0.14 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.83 BNILDI_14585 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli ECRC102 0.14 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.83 NIAGMN_22385 GDP-mannose 4,6-dehydratase low > 80
Escherichia coli ECOR38 0.14 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.83 HEPCGN_03045 GDP-mannose 4,6-dehydratase low > 88
Escherichia coli ECOR27 0.14 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.83 NOLOHH_15675 GDP-mannose 4,6-dehydratase low > 76
Escherichia coli BL21 0.14 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.83 ECD_01959 GDP-D-mannose dehydratase, NAD(P)-binding low > 61
Escherichia coli ECRC98 0.14 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.83 JDDGAC_28550 GDP-mannose 4,6-dehydratase — —
Escherichia coli BW25113 0.14 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.83 b2053 gmd GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECRC101 0.14 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.83 MCAODC_20500 GDP-mannose 4,6-dehydratase — —
Desulfovibrio vulgaris Hildenborough JW710 0.13 DVU2251 DNA-binding protein (TIGR) 0.69 DVU0448 gmd GDP-mannose 4,6-dehydratase (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_4557 Predicted transcriptional regulators 0.66 Echvi_4398 GDP-mannose 4,6-dehydratase low > 79
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS17685 helix-turn-helix transcriptional regulator 0.61 HMPREF1058_RS06615 GDP-mannose 4,6-dehydratase low > 67
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13885 helix-turn-helix transcriptional regulator 0.61 ABI39_RS20410 GDP-mannose 4,6-dehydratase low > 72
Desulfovibrio vulgaris Miyazaki F 0.13 DvMF_2356 transcriptional regulator, XRE family (RefSeq) 0.67 DvMF_2694 GDP-mannose 4,6-dehydratase (RefSeq) low > 51
Bosea sp. OAE506 0.12 ABIE41_RS05345 cupin domain-containing protein 0.44 ABIE41_RS02910 GDP-mannose 4,6-dehydratase low > 77

Not shown: 16 genomes with orthologs for CSW01_15345 only; 45 genomes with orthologs for CSW01_01280 only