| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12705 | | RNA polymerase-associated protein RapA | 1.0 | CSW01_00765 | | Si-specific NAD(P)(+) transhydrogenase | 0.64 | 6 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_03275 | | RNA polymerase-associated protein RapA | 0.78 | IAI46_24470 | | Si-specific NAD(P)(+) transhydrogenase | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF183 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.76 | GFF2348 | | Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) | low | > 78 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS18235 | | RNA polymerase-associated protein RapA | 0.78 | DDA3937_RS00975 | | Si-specific NAD(P)(+) transhydrogenase | low | > 74 |
| Rahnella sp. WP5 | 0.65 | EX31_RS03745 | | RNA polymerase-associated protein RapA | 0.78 | EX31_RS14165 | | Si-specific NAD(P)(+) transhydrogenase | low | > 89 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_08460 | rapA | RNA polymerase-associated protein RapA | 0.78 | BNILDI_05830 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 75 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_03145 | rapA | RNA polymerase-associated protein RapA | 0.78 | NOLOHH_05695 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 76 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_08650 | rapA | RNA polymerase-associated protein RapA | 0.78 | NIAGMN_11310 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 80 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_01315 | rapA | RNA polymerase-associated protein RapA | 0.78 | MCAODC_04060 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 87 |
| Escherichia coli BL21 | 0.65 | ECD_00061 | | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase | 0.78 | ECD_03847 | | pyridine nucleotide transhydrogenase, soluble | low | > 61 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_17355 | rapA | RNA polymerase-associated protein RapA | 0.78 | KEDOAH_14600 | sthA | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Escherichia coli BW25113 | 0.65 | b0059 | hepA | ATP-dependent helicase HepA (NCBI) | 0.78 | b3962 | udhA | putative oxidoreductase (VIMSS) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_03599 | | RNA polymerase-associated protein RapA | 0.78 | OHPLBJKB_04088 | | Soluble pyridine nucleotide transhydrogenase | low | > 74 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_00753 | | RNA polymerase-associated protein RapA | 0.79 | MPMX20_04518 | | Soluble pyridine nucleotide transhydrogenase | low | > 85 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS00315 | | RNA polymerase-associated protein RapA | 0.78 | ECOLIN_RS22875 | | Si-specific NAD(P)(+) transhydrogenase | low | > 55 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_14395 | rapA | RNA polymerase-associated protein RapA | 0.78 | JDDGAC_17185 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 87 |
| Escherichia coli ECRC100 | 0.65 | OKFHMN_10800 | rapA | RNA polymerase-associated protein RapA | 0.78 | OKFHMN_13560 | sthA | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS18170 | | RNA polymerase-associated protein RapA | 0.77 | HGI48_RS20400 | | Si-specific NAD(P)(+) transhydrogenase | low | > 71 |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS04570 | | RNA polymerase-associated protein RapA | 0.79 | BWI76_RS00870 | | NAD(P)(+) transhydrogenase | — | — |
| Klebsiella pneumoniae MKP103 | 0.65 | KDGMDA_12795 | | RNA polymerase-associated protein RapA | 0.79 | KDGMDA_09385 | | Si-specific NAD(P)(+) transhydrogenase | low | > 95 |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_3651 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.79 | EX28DRAFT_4425 | | Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes | low | > 76 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08790 | rapA | RNA polymerase-associated protein RapA | 0.78 | HEPCGN_12205 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 88 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03986 | | RNA polymerase-associated protein RapA | 0.78 | EFB2_04650 | | Soluble pyridine nucleotide transhydrogenase | low | > 86 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS19310 | | RNA polymerase-associated protein RapA | 0.77 | DZA65_RS21445 | | Si-specific NAD(P)(+) transhydrogenase | low | > 75 |
| Pantoea agglomerans CFBP13505 P0401 | 0.64 | PagCFBP13505_RS12940 | | RNA polymerase-associated protein RapA | 0.77 | PagCFBP13505_RS18405 | | Si-specific NAD(P)(+) transhydrogenase | low | > 74 |
| Pantoea sp. MT58 | 0.64 | IAI47_16055 | | RNA polymerase-associated protein RapA | 0.77 | IAI47_00935 | | Si-specific NAD(P)(+) transhydrogenase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS02990 | | RNA polymerase-associated protein RapA | 0.78 | HER17_RS00960 | | Si-specific NAD(P)(+) transhydrogenase | low | > 75 |
| Erwinia amylovora T8 | 0.63 | OLJFJH_01340 | | RNA polymerase-associated protein RapA | 0.77 | OLJFJH_06145 | | Si-specific NAD(P)(+) transhydrogenase | low | > 58 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS02805 | rapA | RNA polymerase-associated protein RapA | 0.77 | LU632_RS19585 | sthA | Si-specific NAD(P)(+) transhydrogenase | 0.66 | 6 |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_06075 | | RNA polymerase-associated protein RapA | 0.77 | IJEDHG_13075 | sthA | Si-specific NAD(P)(+) transhydrogenase | low | > 61 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_19955 | | RNA polymerase associated protein RapA | 0.62 | OH686_22005 | | Soluble pyridine nucleotide transhydrogenase | low | > 80 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00612 | | RNA polymerase-associated protein RapA | 0.61 | PFR28_01127 | | Soluble pyridine nucleotide transhydrogenase | low | > 88 |
| Pseudomonas sp. DMC3 | 0.46 | GFF2193 | | RNA polymerase-associated protein RapA | 0.61 | GFF1289 | | Soluble pyridine nucleotide transhydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_04975 | | RNA polymerase-associated protein RapA | 0.61 | AO356_02250 | | pyridine nucleotide-disulfide oxidoreductase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_2845 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.61 | Pf6N2E2_2274 | | Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) | low | > 103 |
| Pseudomonas lactucae CFBP13502 | 0.46 | GEMAOFIL_01492 | | RNA polymerase-associated protein RapA | 0.61 | GEMAOFIL_01662 | | Soluble pyridine nucleotide transhydrogenase | low | > 96 |
| Pseudomonas sp. SVBP6 | 0.46 | COO64_RS17145 | rapA | RNA polymerase-associated protein RapA | 0.62 | COO64_RS09475 | sthA | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_17155 | | RNA polymerase-associated protein RapA | 0.61 | AO353_00390 | | pyridine nucleotide-disulfide oxidoreductase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.62 | Psyr_1901 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase:Pyridine nucleotide-disulfide oxidoreductase dimerization region | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.62 | Psyr_1901 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase:Pyridine nucleotide-disulfide oxidoreductase dimerization region | — | — |
| Pseudomonas segetis P6 | 0.46 | MPMX49_03288 | | RNA polymerase-associated protein RapA | 0.62 | MPMX49_01854 | | Soluble pyridine nucleotide transhydrogenase | low | > 75 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_3224 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.61 | Pf1N1B4_3919 | | Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_4599 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.61 | PfGW456L13_4024 | | Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) | — | — |
| Pseudomonas orientalis W4I3 | 0.46 | QF045_RS09435 | | RNA polymerase-associated protein RapA | 0.61 | QF045_RS10295 | | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.62 | PFLU_RS07725 | | Si-specific NAD(P)(+) transhydrogenase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.62 | PFLU_RS07725 | | Si-specific NAD(P)(+) transhydrogenase | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_1327 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.63 | Psest_1663 | | Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes | low | > 67 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS24235 | rapA | RNA polymerase-associated protein RapA | 0.61 | JOY50_RS25115 | sthA | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.46 | DY961_RS00330 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.63 | DY961_RS02010 | sthA;go_function=NAD(P | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas aeruginosa PA14 | 0.46 | IKLFDK_16965 | | RNA polymerase-associated protein RapA | 0.63 | IKLFDK_15220 | | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas putida KT2440 | 0.46 | PP_1145 | | RNA polymerase-associated protein RapA | 0.61 | PP_2151 | | soluble pyridine nucleotide transhydrogenase | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.46 | DQ20_RS40690 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.63 | DQ20_RS33570 | sthA;go_function=NAD(P | Si-specific NAD(P)(+) transhydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.45 | PS417_06645 | | RNA polymerase-associated protein RapA | 0.61 | PS417_07650 | | pyridine nucleotide-disulfide oxidoreductase | — | — |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_00659 | | RNA polymerase-associated protein RapA | 0.74 | MIT1002_03373 | | Soluble pyridine nucleotide transhydrogenase | low | > 70 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_3376 | | RNA polymerase-associated protein RapA | 0.62 | HP15_2245 | | soluble pyridine nucleotide transhydrogenase | — | — |
| Acinetobacter baumannii LAC-4 | 0.38 | RR41_RS05200 | | RNA polymerase-associated protein RapA | 0.58 | RR41_RS05755 | | Si-specific NAD(P)(+) transhydrogenase | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_01027 | | RNA polymerase-associated protein RapA | 0.58 | MPMX26_02117 | | Soluble pyridine nucleotide transhydrogenase | low | > 36 |
Not shown: 9 genomes with orthologs for CSW01_12705 only; 5 genomes with orthologs for CSW01_00765 only