Conservation of cofitness between BPHYT_RS03650 and BPHYT_RS04005 in Burkholderia phytofirmans PsJN

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS03650 DNA mismatch repair protein 1.0 BPHYT_RS04005 GDP-L-fucose synthase 0.44 3
Paraburkholderia bryophila 376MFSha3.1 0.88 H281DRAFT_04712 DNA mismatch repair protein MutL 0.90 H281DRAFT_04777 GDP-L-fucose synthase low > 103
Paraburkholderia graminis OAS925 0.86 ABIE53_000877 DNA mismatch repair protein MutL 0.90 ABIE53_000941 GDP-L-fucose synthase low > 113
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS26435 DNA mismatch repair endonuclease MutL 0.82 QEN71_RS26355 GDP-L-fucose synthase low > 153
Castellaniella sp019104865 MT123 0.45 ABCV34_RS08785 DNA mismatch repair endonuclease MutL 0.56 ABCV34_RS12930 GDP-L-fucose synthase — —
Variovorax sp. SCN45 0.44 GFF4800 DNA mismatch repair protein MutL 0.49 GFF60 GDP-L-fucose synthetase (EC 1.1.1.271) low > 127
Variovorax sp. OAS795 0.43 ABID97_RS20310 DNA mismatch repair endonuclease MutL 0.52 ABID97_RS19130 GDP-L-fucose synthase low > 91
Dechlorosoma suillum PS 0.43 Dsui_1551 DNA mismatch repair protein MutL 0.58 Dsui_0086 nucleoside-diphosphate-sugar epimerase low > 51
Pseudomonas stutzeri RCH2 0.40 Psest_0681 DNA mismatch repair protein MutL 0.57 Psest_1819 Nucleoside-diphosphate-sugar epimerases low > 67
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.54 PFLU_RS17885 GDP-L-fucose synthase low > 109
Pseudomonas fluorescens SBW25 0.39 PFLU_RS02560 DNA mismatch repair endonuclease MutL 0.54 PFLU_RS17885 GDP-L-fucose synthase low > 109
Rhodanobacter denitrificans MT42 0.38 LRK55_RS14865 DNA mismatch repair endonuclease MutL 0.57 LRK55_RS03655 GDP-L-fucose synthase low > 63
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS17205 DNA mismatch repair protein 0.70 RR42_RS34460 GDP-L-fucose synthase low > 128
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04190 DNA mismatch repair protein 0.48 HSERO_RS22065 EpiA low > 78
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04225 DNA mismatch repair endonuclease MutL 0.24 A4249_RS13020 NAD-dependent epimerase/dehydratase family protein low > 48
Azospirillum brasilense Sp245 0.30 AZOBR_RS05025 DNA mismatch repair protein MutL 0.56 AZOBR_RS03370 GDP-L-fucose synthase low > 97
Azospirillum sp. SherDot2 0.30 MPMX19_01619 DNA mismatch repair protein MutL 0.54 MPMX19_06634 GDP-L-fucose synthase low > 112
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00731 DNA mismatch repair protein mutL 0.54 CCNA_00471 GDP-L-fucose synthase low > 67
Caulobacter crescentus NA1000 0.29 CCNA_00731 DNA mismatch repair protein mutL 0.54 CCNA_00471 GDP-L-fucose synthase low > 66
Phaeobacter inhibens DSM 17395 0.28 PGA1_c32740 DNA mismatch repair protein MutL 0.52 PGA1_65p00300 GDP-L-fucose synthetase Fcl — —
Agrobacterium fabrum C58 0.28 Atu0699 DNA mismatch repair protein MutL 0.50 Atu4790 GDP-fucose synthetase low > 89
Rhizobium sp. OAE497 0.28 ABIE40_RS05235 DNA mismatch repair endonuclease MutL 0.14 ABIE40_RS02610 NAD-dependent epimerase/dehydratase family protein low > 107
Dickeya dadantii 3937 0.25 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.23 DDA3937_RS18680 GDP-L-fucose synthase low > 74
Pectobacterium carotovorum WPP14 0.25 HER17_RS02575 DNA mismatch repair endonuclease MutL 0.54 HER17_RS14535 GDP-L-fucose synthase low > 75
Dickeya dianthicola ME23 0.24 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.23 DZA65_RS19745 GDP-L-fucose synthase 0.54 3
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_13305 DNA mismatch repair protein MutL 0.61 CA264_05195 GDP-fucose synthetase — —
Enterobacter sp. TBS_079 0.24 MPMX20_00451 DNA mismatch repair protein MutL 0.58 MPMX20_03034 GDP-L-fucose synthase low > 85
Enterobacter asburiae PDN3 0.23 EX28DRAFT_3367 DNA mismatch repair protein MutL 0.57 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases low > 76
Escherichia coli ECOR27 0.23 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL 0.57 NOLOHH_15680 fcl GDP-L-fucose synthase low > 75
Escherichia coli ECRC62 0.23 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL 0.57 BNILDI_14590 fcl GDP-L-fucose synthase low > 75
Escherichia coli BL21 0.23 ECD_04037 methyl-directed mismatch repair protein 0.57 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase low > 61
Escherichia coli BW25113 0.23 b4170 mutL DNA mismatch repair protein (NCBI) 0.57 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) low > 76
Escherichia fergusonii Becca 0.23 EFB2_04365 DNA mismatch repair protein MutL 0.57 EFB2_01802 GDP-L-fucose synthase low > 86
Escherichia coli Nissle 1917 0.23 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 0.57 ECOLIN_RS12090 GDP-L-fucose synthase — —
Escherichia coli ECOR38 0.23 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 0.57 HEPCGN_03050 fcl GDP-L-fucose synthase low > 87
Escherichia coli ECRC102 0.23 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL 0.57 NIAGMN_22295 fcl GDP-L-fucose synthase — —
Escherichia coli ECRC101 0.23 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL 0.57 MCAODC_20590 fcl GDP-L-fucose synthase low > 87
Escherichia coli ECRC99 0.23 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL 0.57 KEDOAH_03800 fcl GDP-L-fucose synthase — —
Escherichia coli ECRC100 0.23 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL 0.57 OKFHMN_24350 fcl GDP-L-fucose synthase low > 80
Escherichia coli ECRC98 0.23 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL 0.57 JDDGAC_28460 fcl GDP-L-fucose synthase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF823 DNA mismatch repair protein MutL 0.57 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) low > 78
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS02285 DNA mismatch repair endonuclease MutL 0.49 ABI39_RS20405 GDP-L-fucose synthase low > 72
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS02970 DNA mismatch repair endonuclease MutL 0.49 HMPREF1058_RS06610 GDP-L-fucose synthase low > 67
Bacteroides ovatus ATCC 8483 0.20 BACOVA_00344 DNA mismatch repair domain protein 0.50 BACOVA_00512 NAD dependent epimerase/dehydratase family protein — —
Rhodospirillum rubrum S1H 0.12 Rru_A2946 DNA mismatch repair protein (NCBI) 0.53 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) low > 58

Not shown: 33 genomes with orthologs for BPHYT_RS03650 only; 14 genomes with orthologs for BPHYT_RS04005 only