Conservation of cofitness between BNILDI_05025 and BNILDI_05845 in Escherichia coli ECRC62

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC62 1.0 BNILDI_05025 rarD EamA family transporter RarD 1.0 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.63 4
Escherichia coli ECOR27 1.00 NOLOHH_06505 rarD EamA family transporter RarD 1.00 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli ECRC100 1.00 OKFHMN_14375 rarD EamA family transporter RarD 1.00 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECRC99 1.00 KEDOAH_13775 rarD EamA family transporter RarD 1.00 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC102 1.00 NIAGMN_12130 rarD EamA family transporter RarD 1.00 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC98 1.00 JDDGAC_18000 rarD EamA family transporter RarD 1.00 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Escherichia fergusonii Becca 0.99 EFB2_04818 Protein RarD 0.99 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli BW25113 0.99 b3819 rarD predicted chloramphenical resistance permease (NCBI) 1.00 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04232 Protein RarD 1.00 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 73
Escherichia coli BL21 0.99 ECD_03698 putative chloramphenical resistance permease 1.00 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase low > 61
Escherichia coli ECOR38 0.99 HEPCGN_13075 rarD EamA family transporter RarD 0.99 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli ECRC101 0.99 MCAODC_04880 rarD EamA family transporter RarD 0.99 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS21920 EamA family transporter RarD 0.99 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF245 Protein rarD 0.94 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_4484 rarD protein 0.92 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_04461 Protein RarD 0.93 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS01230 chloramphenicol resistance permease RarD 0.93 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 92
Serratia liquefaciens MT49 0.80 IAI46_00755 EamA family transporter RarD 0.82 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Pectobacterium carotovorum WPP14 0.76 HER17_RS01380 EamA family transporter RarD 0.80 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Erwinia tracheiphila SCR3 0.74 LU632_RS24110 rarD EamA family transporter RarD 0.78 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Pantoea sp. MT58 0.73 IAI47_18375 EamA family transporter RarD 0.83 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Rahnella sp. WP5 0.71 EX31_RS15195 EamA family transporter RarD 0.77 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 89
Dickeya dadantii 3937 0.67 DDA3937_RS19865 EamA family transporter RarD 0.81 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS21060 EamA family transporter RarD 0.80 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS20020 EamA family transporter RarD 0.80 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_01040 protein RarD 0.65 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 62
Shewanella oneidensis MR-1 0.59 SO4243 rarD rarD protein (NCBI ptt file) 0.60 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_3765 transporter DMT superfamily protein (RefSeq) 0.60 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.57 Shew_3476 transporter DMT superfamily protein (RefSeq) 0.61 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.55 Sama_0332 rarD protein (RefSeq) 0.60 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.49 MIT1002_00151 putative chloramphenical resistance permease RarD 0.59 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase low > 70
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_4754 Protein rarD 0.48 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.29 73
Pseudomonas sp. RS175 0.48 PFR28_04108 Protein RarD 0.48 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_2480 Protein rarD 0.47 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1142 Protein rarD 0.47 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_14110 Putative D-serine transporter (from data) 0.47 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_07550 chloramphenical resistance permease RarD 0.47 AO353_13905 tRNA (uracil-5-)-methyltransferase low > 101
Pseudomonas putida KT2440 0.46 PP_0358 conserved membrane protein of unknown function 0.48 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96
Pseudomonas fluorescens SBW25 0.46 PFLU_RS27675 EamA family transporter RarD 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas simiae WCS417 0.46 PS417_26030 chloramphenical resistance permease RarD 0.48 PS417_24385 tRNA (uracil-5-)-methyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS27675 EamA family transporter RarD 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas stutzeri RCH2 0.41 Psest_0356 rarD protein 0.50 Psest_3451 tRNA (uracil-5-)-methyltransferase low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4698 RarD protein 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4698 RarD protein 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas sp. S08-1 0.38 OH686_10385 Uncharacterized inner membrane protein RarD 0.47 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase low > 80
Acinetobacter radioresistens SK82 0.18 MPMX26_02140 Protein RarD 0.50 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 36

Not shown: 34 genomes with orthologs for BNILDI_05025 only; 1 genomes with orthologs for BNILDI_05845 only