Conservation of cofitness between BBR_RS10715 and BBR_RS13845 in Bifidobacterium breve UCC2003

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS10715 tRNA-guanine(34) transglycosylase 1.0 BBR_RS13845 dipeptidase 0.39 14
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_04670 tRNA-guanine transglycosylase 0.15 H281DRAFT_02929 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase low > 103
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.09 HSERO_RS15930 hypothetical protein low > 78
Dinoroseobacter shibae DFL-12 0.30 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.18 Dshi_1181 peptidase M20 (RefSeq) 0.35 2
Variovorax sp. SCN45 0.30 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.17 GFF3260 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases low > 127
Dickeya dianthicola ME23 0.30 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.10 DZA65_RS02340 M20 family metallopeptidase low > 75
Rahnella sp. WP5 0.30 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.11 EX31_RS09715 M20 family metallopeptidase low > 89
Phaeobacter inhibens DSM 17395 0.30 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.17 PGA1_c20360 putative glutamate carboxypeptidase low > 62
Acidovorax sp. GW101-3H11 0.30 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.17 Ac3H11_4286 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases low > 79
Variovorax sp. OAS795 0.30 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.17 ABID97_RS02570 M20 family metallopeptidase low > 91
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.16 QEN71_RS10910 M20 family metallopeptidase low > 153
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.20 Echvi_1201 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.16 GFF2455 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases low > 90
Bosea sp. OAE506 0.29 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.20 ABIE41_RS21600 dipeptidase low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.22 CA265_RS12940 peptidase dimerization domain protein low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_00655 tRNA-guanine(34) transglycosylase 0.23 CA264_14865 peptidase dimerization domain protein 0.45 57
Agrobacterium fabrum C58 0.28 Atu1677 queuine tRNA-ribosyltransferase 0.17 Atu0108 putative metalloprotease M20 family low > 89
Pseudomonas sp. RS175 0.28 PFR28_00277 Queuine tRNA-ribosyltransferase 0.12 PFR28_00047 Succinyl-diaminopimelate desuccinylase low > 88
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_06690 queuine tRNA-ribosyltransferase 0.12 AO356_29395 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.12 Pf6N2E2_1814 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases low > 103
Rhizobium sp. OAE497 0.28 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.19 ABIE40_RS24205 dipeptidase low > 107
Azospirillum brasilense Sp245 0.28 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.21 AZOBR_RS11700 hypothetical protein low > 97
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.23 ABZR88_RS07775 dipeptidase low > 71
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.16 Xcc-8004.1683.1 succinyl-diaminopimelate desuccinylase low > 74
Sinorhizobium meliloti 1021 0.28 SMc01206 queuine tRNA-ribosyltransferase 0.17 SMc02852 hypothetical protein low > 103
Azospirillum sp. SherDot2 0.28 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.19 MPMX19_05425 Succinyl-diaminopimelate desuccinylase low > 112
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.20 HMPREF1181_RS08370 dipeptidase low > 56
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.20 ABI39_RS12640 dipeptidase low > 72
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.20 HMPREF1058_RS16725 dipeptidase low > 67
Rhodopseudomonas palustris CGA009 0.27 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.19 TX73_009480 M20/M25/M40 family metallo-hydrolase low > 86
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.20 HMPREF1078_RS09690 dipeptidase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.27 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.21 BT2085 putative succinyl-diaminopimelate desuccinylase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.26 BACOVA_02570 tRNA-guanine transglycosylase 0.21 BACOVA_03295 peptidase dimerization domain protein low > 94

Not shown: 67 genomes with orthologs for BBR_RS10715 only; 2 genomes with orthologs for BBR_RS13845 only