Conservation of cofitness between Atu2832 and Atu0978 in Agrobacterium fabrum C58

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2832 tRNA modification GTPase 1.0 Atu0978 two component response regulator 0.57 3
Rhizobium sp. OAE497 0.52 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.85 ABIE40_RS05700 response regulator transcription factor low > 107
Sinorhizobium meliloti 1021 0.51 SMc02797 tRNA modification GTPase TrmE 0.81 SMc02366 transcriptional regulator — —
Azospirillum sp. SherDot2 0.38 MPMX19_02568 tRNA modification GTPase MnmE 0.60 MPMX19_00794 Transcriptional activator protein CopR — —
Caulobacter crescentus NA1000 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase 0.55 CCNA_02845 two-component response regulator 0.39 55
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase 0.55 CCNA_02845 two-component response regulator low > 67
Azospirillum brasilense Sp245 0.37 AZOBR_RS01805 tRNA modification GTPase TrmE 0.59 AZOBR_RS10800 XRE family transcriptional regulator low > 97
Magnetospirillum magneticum AMB-1 0.37 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.59 AMB_RS14570 DNA-binding response regulator — —
Rhodopseudomonas palustris CGA009 0.37 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.68 TX73_009945 response regulator transcription factor low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.54 A4249_RS10810 response regulator transcription factor low > 48
Rhodospirillum rubrum S1H 0.33 Rru_A3624 tRNA modification GTPase TrmE (NCBI) 0.56 Rru_A2913 Two component Transcriptional regulator, Winged helix family (NCBI) — —
Bosea sp. OAE506 0.33 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.67 ABIE41_RS21440 response regulator transcription factor low > 77
Shewanella oneidensis MR-1 0.31 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) 0.46 SO4428 DNA-binding response regulator (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.31 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) 0.46 Shewana3_0282 two component transcriptional regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.30 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) 0.44 Sama_3534 response regulator receiver protein (RefSeq) — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_3993 tRNA modification GTPase TrmE 0.41 EX28DRAFT_1165 heavy metal response regulator — —
Shewanella loihica PV-4 0.29 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) 0.47 Shew_0097 two component transcriptional regulator (RefSeq) — —
Enterobacter sp. TBS_079 0.29 MPMX20_04650 tRNA modification GTPase MnmE 0.42 MPMX20_02319 Transcriptional regulatory protein CusR low > 85
Dickeya dianthicola ME23 0.29 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.42 DZA65_RS03595 copper/silver response regulator transcription factor SilR low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.42 HGI48_RS03485 heavy metal response regulator transcription factor low > 71
Lysobacter sp. OAE881 0.29 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.53 ABIE51_RS04165 response regulator transcription factor low > 62
Alteromonas macleodii MIT1002 0.29 MIT1002_04128 tRNA modification GTPase MnmE 0.46 MIT1002_03097 Transcriptional activator protein CopR — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.46 ABZR86_RS12570 response regulator transcription factor low > 74
Variovorax sp. SCN45 0.28 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE 0.44 GFF2474 Two-component transcriptional response regulator SMc02366, LuxR family — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.46 OKGIIK_04905 DNA-binding response regulator low > 52
Marinobacter adhaerens HP15 0.27 HP15_3698 tRNA modification GTPase TrmE 0.59 HP15_3484 DNA-binding response regulator — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_06625 tRNA modification GTPase 0.38 CA264_02615 DNA-binding response regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.45 GFF1757 response regulator in two-component regulatory system with PhoQ — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3509 tRNA modification GTPase TrmE 0.35 Echvi_2622 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS10450 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.36 CA265_RS03060 DNA-binding response regulator — —
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS13880 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.38 HMPREF1078_RS01665 response regulator transcription factor low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS02725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.35 ABZR88_RS15000 response regulator transcription factor — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4551 putative GTPase, ThdF family (NCBI ptt file) 0.33 BT0682 two-component system response regulator (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS18355 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.35 ABI39_RS05370 response regulator transcription factor low > 72
Bacteroides ovatus ATCC 8483 0.22 BACOVA_05338 tRNA modification GTPase TrmE 0.33 BACOVA_02385 response regulator receiver domain protein low > 94
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1079 trmE tRNA modification GTPase TrmE (TIGR) 0.28 DVU2588 trcR DNA-binding response regulator (TIGR) low > 55

Not shown: 64 genomes with orthologs for Atu2832 only; 1 genomes with orthologs for Atu0978 only