Conservation of cofitness between Atu2162 and Atu0321 in Agrobacterium fabrum C58

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2162 periplasmic immunogenic protein 1.0 Atu0321 formamidopyrimidine-DNA glycosylase 0.19 14
Rhizobium sp. OAE497 0.60 ABIE40_RS12160 SIMPL domain-containing protein 0.71 ABIE40_RS01590 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 107
Sinorhizobium meliloti 1021 0.49 SMc01556 hypothetical protein 0.69 SMc01154 formamidopyrimidine-DNA glycosylase low > 103
Dinoroseobacter shibae DFL-12 0.29 Dshi_0791 protein of unknown function DUF541 (RefSeq) 0.54 Dshi_3369 formamidopyrimidine-DNA glycosylase (RefSeq) low > 64
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.1878.1 Protein of unknown function DUF541 0.35 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 74
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_02378 SIMPL family protein 0.48 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 67
Caulobacter crescentus NA1000 0.24 CCNA_02378 SIMPL family protein 0.48 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 66
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_1880 Uncharacterized conserved protein 0.44 Ga0059261_3586 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 68
Rhodopseudomonas palustris CGA009 0.22 TX73_001290 SIMPL domain-containing protein 0.57 TX73_000435 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 86
Lysobacter sp. OAE881 0.22 ABIE51_RS06775 SIMPL domain-containing protein 0.35 ABIE51_RS00335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 62
Phaeobacter inhibens DSM 17395 0.21 PGA1_c07630 Uncharacterized conserved protein 0.50 PGA1_c36490 formamidopyrimidine-DNA glycosylase MutM low > 62
Shewanella oneidensis MR-1 0.20 SO4070 conserved hypothetical protein (NCBI ptt file) 0.29 SO4726 mutM formamidopyrimidine-DNA glycosylase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.20 Sama_0486 hypothetical protein (RefSeq) 0.31 Sama_0117 formamidopyrimidine-DNA glycosylase (RefSeq) low > 62
Rahnella sp. WP5 0.18 EX31_RS21445 oxidative stress defense protein 0.33 EX31_RS14455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 89
Klebsiella michiganensis M5al 0.17 BWI76_RS23960 oxidative stress defense protein 0.32 BWI76_RS27330 DNA-formamidopyrimidine glycosylase low > 92
Serratia liquefaciens MT49 0.16 IAI46_20915 oxidative stress defense protein 0.32 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 86
Pantoea sp. MT58 0.16 IAI47_03710 oxidative stress defense protein 0.30 IAI47_00635 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF3017 Protein of unknown function DUF541 0.31 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 78
Enterobacter sp. TBS_079 0.15 MPMX20_03774 26 kDa periplasmic immunogenic protein 0.32 MPMX20_00100 Formamidopyrimidine-DNA glycosylase low > 85
Enterobacter asburiae PDN3 0.15 EX28DRAFT_2968 Uncharacterized conserved protein 0.32 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 76
Escherichia fergusonii Becca 0.15 EFB2_00984 26 kDa periplasmic immunogenic protein 0.30 EFB2_00178 Formamidopyrimidine-DNA glycosylase low > 86
Erwinia tracheiphila SCR3 0.15 LU632_RS05840 oxidative stress defense protein 0.32 LU632_RS21975 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Escherichia coli ECRC62 0.15 BNILDI_09860 yggE oxidative stress defense protein 0.30 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase — —
Escherichia coli ECOR27 0.15 NOLOHH_11325 yggE oxidative stress defense protein 0.30 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00794 26 kDa periplasmic immunogenic protein 0.30 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase low > 73
Escherichia coli BW25113 0.15 b2922 yggE hypothetical protein (NCBI) 0.30 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) low > 76
Escherichia coli ECRC101 0.15 OKFHMN_19415 yggE oxidative stress defense protein 0.30 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli BL21 0.15 ECD_02753 oxidative stress defense protein 0.30 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase low > 60
Escherichia coli ECRC102 0.15 NIAGMN_17180 yggE oxidative stress defense protein 0.30 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECRC101 0.15 MCAODC_09935 yggE oxidative stress defense protein 0.30 MCAODC_06145 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECOR38 0.15 HEPCGN_18720 yggE oxidative stress defense protein 0.30 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 85
Escherichia coli ECRC99 0.15 KEDOAH_08725 yggE oxidative stress defense protein 0.30 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECRC98 0.15 JDDGAC_23045 yggE oxidative stress defense protein 0.30 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli Nissle 1917 0.15 ECOLIN_RS16240 oxidative stress defense protein 0.30 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 52
Mycobacterium tuberculosis H37Rv 0.14 Rv3623 Probable conserved lipoprotein LpqG 0.22 Rv2924c Probable formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase) low > 58
Dickeya dadantii 3937 0.14 DDA3937_RS18495 oxidative stress defense protein 0.32 DDA3937_RS20500 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Alteromonas macleodii MIT1002 0.13 MIT1002_02021 26 kDa periplasmic immunogenic protein precursor 0.31 MIT1002_00057 Formamidopyrimidine-DNA glycosylase low > 70
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_0620 hypothetical protein 0.21 Synpcc7942_1323 fpg DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase low > 38

Not shown: 1 genomes with orthologs for Atu2162 only; 50 genomes with orthologs for Atu0321 only