Conservation of cofitness between AO356_07175 and AO356_08670 in Pseudomonas fluorescens FW300-N2C3

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_07175 glucarate transporter 1.0 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.32 8
Pseudomonas fluorescens FW300-N2E2 1.00 Pf6N2E2_3297 D-galactarate permease 0.91 Pf6N2E2_3617 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) low > 103
Pseudomonas sp. RS175 0.99 PFR28_00144 putative glucarate transporter 0.94 PFR28_05118 N-acetylmuramoyl-L-alanine amidase AmiC low > 88
Pseudomonas fluorescens SBW25 0.96 PFLU_RS04245 MFS transporter 0.83 PFLU_RS02555 AMIN domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS04245 MFS transporter 0.83 PFLU_RS02555 AMIN domain-containing protein low > 109
Pseudomonas simiae WCS417 0.95 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.83 PS417_02475 N-acetylmuramoyl-L-alanine amidase low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_1108 D-galactarate permease 0.88 Pf1N1B4_1415 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5043 D-galactarate permease 0.88 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_05295 glucarate transporter 0.84 AO353_13130 N-acetylmuramoyl-L-alanine amidase low > 101
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4226 D-galactonate transporter 0.82 Psyr_0569 N-acetylmuramoyl-L-alanine amidase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4226 D-galactonate transporter 0.82 Psyr_0569 N-acetylmuramoyl-L-alanine amidase low > 86
Pseudomonas putida KT2440 0.82 PP_3600 glucarate transporter 0.82 PP_4897 N-acetylmuramoyl-L-alanine amidase low > 96
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.1209.1 D-galactarate permease 0.25 Xcc-8004.3058.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) low > 74
Klebsiella michiganensis M5al 0.67 BWI76_RS22835 MFS transporter 0.28 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase low > 92
Escherichia coli ECOR38 0.67 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.29 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 87
Escherichia coli ECOR27 0.67 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.29 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00942 putative glucarate transporter 0.29 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC low > 73
Escherichia coli ECRC62 0.67 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.29 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 75
Escherichia coli BL21 0.67 ECD_02634 putative D-glucarate transporter 0.29 ECD_02665 N-acetylmuramoyl-L-alanine amidase low > 61
Escherichia fergusonii Becca 0.67 EFB2_01128 putative glucarate transporter 0.29 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC low > 86
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS31870 MFS transporter 0.25 QEN71_RS02735 N-acetylmuramoyl-L-alanine amidase — —
Escherichia coli BW25113 0.67 b2789 gudP predicted D-glucarate transporter (NCBI) 0.29 b2817 b2817 putative amidase (VIMSS) low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.29 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC low > 55
Escherichia coli ECRC101 0.67 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.29 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 87
Escherichia coli ECRC100 0.67 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.29 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 80
Escherichia coli ECRC99 0.67 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.29 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC — —
Escherichia coli ECRC102 0.67 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.29 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC — —
Escherichia coli ECRC98 0.67 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.29 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 86
Pectobacterium carotovorum WPP14 0.67 HER17_RS04075 MFS transporter 0.31 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF4843 D-glucarate permease 0.29 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) low > 78
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS29085 glucarate transporter 0.32 RR42_RS03415 N-acetylmuramoyl-L-alanine amidase low > 128
Rahnella sp. WP5 0.66 EX31_RS03160 MFS transporter 0.27 EX31_RS08835 N-acetylmuramoyl-L-alanine amidase AmiB 0.32 35
Dickeya dadantii 3937 0.65 DDA3937_RS17055 MFS transporter 0.30 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase low > 74
Erwinia tracheiphila SCR3 0.65 LU632_RS06310 MFS transporter 0.30 LU632_RS06215 amiC N-acetylmuramoyl-L-alanine amidase AmiC low > 74
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2870 D-galactonate transporter 0.29 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase low > 76
Ralstonia solanacearum GMI1000 0.65 RS_RS21080 MFS transporter 0.31 RS_RS12730 N-acetylmuramoyl-L-alanine amidase low > 80
Dickeya dianthicola 67-19 0.64 HGI48_RS17110 MFS transporter 0.30 HGI48_RS05005 N-acetylmuramoyl-L-alanine amidase low > 71
Pantoea sp. MT58 0.64 IAI47_04080 MFS transporter 0.29 IAI47_03980 N-acetylmuramoyl-L-alanine amidase low > 76
Dickeya dianthicola ME23 0.64 DZA65_RS18185 MFS transporter 0.30 DZA65_RS05345 N-acetylmuramoyl-L-alanine amidase low > 75
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS20330 MFS transporter 0.28 ABZR87_RS00765 N-acetylmuramoyl-L-alanine amidase low > 80
Ralstonia solanacearum PSI07 0.64 RPSI07_RS03475 MFS transporter 0.28 RPSI07_RS12185 N-acetylmuramoyl-L-alanine amidase low > 81
Enterobacter sp. TBS_079 0.64 MPMX20_03659 putative glucarate transporter 0.29 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC low > 85
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS19740 MFS transporter 0.28 RALBFv3_RS05110 N-acetylmuramoyl-L-alanine amidase low > 76
Ralstonia solanacearum UW163 0.64 UW163_RS19435 MFS transporter 0.28 UW163_RS08515 N-acetylmuramoyl-L-alanine amidase — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS24150 glucarate transporter 0.29 BPHYT_RS15970 N-acetylmuramoyl-L-alanine amidase — —

Not shown: 5 genomes with orthologs for AO356_07175 only; 24 genomes with orthologs for AO356_08670 only