Conservation of cofitness between Sama_3299 and Sama_2839 in Shewanella amazonensis SB2B

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) 1.0 Sama_2839 sulfite reductase subunit alpha (RefSeq) 0.86 6
Shewanella sp. ANA-3 0.80 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) 0.50 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.89 4
Shewanella oneidensis MR-1 0.80 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) 0.52 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) 0.84 32
Shewanella loihica PV-4 0.80 Shew_0278 branched-chain amino acid aminotransferase (RefSeq) 0.52 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4199.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.38 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 74
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.14 RR42_RS37040 sulfite reductase subunit alpha 0.28 32
Alteromonas macleodii MIT1002 0.19 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component — —
Klebsiella michiganensis M5al 0.17 BWI76_RS00970 branched chain amino acid aminotransferase 0.50 BWI76_RS22765 sulfite reductase subunit alpha 0.44 64
Serratia liquefaciens MT49 0.17 IAI46_24350 branched-chain-amino-acid transaminase 0.49 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 86
Dickeya dianthicola ME23 0.17 DZA65_RS21340 branched-chain amino acid transaminase 0.49 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.71 26
Dickeya dadantii 3937 0.17 DDA3937_RS20160 branched-chain-amino-acid transaminase 0.49 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.81 8
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.48 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 78
Escherichia coli ECRC98 0.17 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase 0.48 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli Nissle 1917 0.17 ECOLIN_RS21660 branched-chain-amino-acid transaminase 0.48 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 52
Pantoea sp. MT58 0.17 IAI47_01030 branched-chain amino acid transaminase 0.50 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.87 49
Escherichia coli ECRC102 0.17 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase 0.48 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli ECOR27 0.17 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase 0.48 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 57
Escherichia coli ECRC62 0.17 BNILDI_04745 ilvE branched-chain-amino-acid transaminase 0.49 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli BW25113 0.17 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.48 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.94 24
Escherichia coli ECRC101 0.17 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase 0.48 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli ECRC99 0.17 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase 0.48 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli ECOR38 0.17 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase 0.48 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase 0.49 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component low > 73
Escherichia fergusonii Becca 0.17 EFB2_04866 Branched-chain-amino-acid aminotransferase 0.48 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component low > 86
Escherichia coli ECRC101 0.17 MCAODC_05150 ilvE branched-chain-amino-acid transaminase 0.48 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Enterobacter sp. TBS_079 0.17 MPMX20_04500 Branched-chain-amino-acid aminotransferase 0.48 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component low > 85
Escherichia coli BL21 0.17 ECD_03648 branched-chain amino acid aminotransferase 0.49 ECD_02609 sulfite reductase, alpha subunit, flavoprotein 0.66 31
Rahnella sp. WP5 0.17 EX31_RS15000 branched-chain amino acid transaminase 0.51 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.85 60
Dickeya dianthicola 67-19 0.17 HGI48_RS20300 branched-chain-amino-acid transaminase 0.49 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 71
Pectobacterium carotovorum WPP14 0.16 HER17_RS01070 branched-chain amino acid transaminase 0.50 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 11
Erwinia tracheiphila SCR3 0.16 LU632_RS24405 branched-chain amino acid transaminase 0.49 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.62 56
Enterobacter asburiae PDN3 0.16 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I 0.49 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component 0.76 26
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_00145 branched-chain-amino-acid transaminase 0.52 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 62
Castellaniella sp019104865 MT123 0.14 ABCV34_RS07930 branched-chain amino acid transaminase 0.38 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 48
Rhodanobacter denitrificans MT42 0.11 LRK55_RS11755 branched-chain amino acid transaminase 0.40 LRK55_RS00705 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.11 LRK54_RS12020 branched-chain amino acid transaminase 0.41 LRK54_RS00930 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 59
Pseudomonas stutzeri RCH2 0.11 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.14 Psest_3345 Sulfite reductase, alpha subunit (flavoprotein) low > 67
Rhodanobacter sp. FW510-T8 0.11 OKGIIK_11840 ilvE branched-chain amino acid transaminase 0.39 OKGIIK_05960 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 52
Lysobacter sp. OAE881 0.11 ABIE51_RS16505 branched-chain amino acid transaminase 0.40 ABIE51_RS15825 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 62

Not shown: 51 genomes with orthologs for Sama_3299 only; 5 genomes with orthologs for Sama_2839 only