Conservation of cofitness between b3093 and b3993 in Escherichia coli BW25113

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3093 exuT hexuronate transporter (NCBI) 1.0 b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) 0.28 12
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_00609 Hexuronate transporter 0.99 OHPLBJKB_04057 Thiamine-phosphate synthase low > 73
Escherichia coli ECRC101 0.91 OKFHMN_18515 exuT hexuronate transporter ExuT 0.99 OKFHMN_13380 thiE thiamine phosphate synthase — —
Escherichia coli ECRC102 0.91 NIAGMN_16280 exuT hexuronate transporter ExuT 0.99 NIAGMN_11130 thiE thiamine phosphate synthase — —
Escherichia coli ECRC99 0.91 KEDOAH_09630 exuT hexuronate transporter ExuT 0.99 KEDOAH_14780 thiE thiamine phosphate synthase — —
Escherichia coli BL21 0.91 ECD_02962 hexuronate transporter 1.00 ECD_03870 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) low > 60
Escherichia coli ECOR38 0.91 HEPCGN_17370 exuT hexuronate transporter ExuT 0.96 HEPCGN_12015 thiE thiamine phosphate synthase low > 85
Escherichia coli ECOR27 0.91 NOLOHH_10315 exuT hexuronate transporter ExuT 1.00 NOLOHH_05525 thiE thiamine phosphate synthase low > 57
Escherichia coli ECRC98 0.91 JDDGAC_22150 exuT hexuronate transporter ExuT 0.99 JDDGAC_17005 thiE thiamine phosphate synthase — —
Escherichia coli ECRC101 0.91 MCAODC_09030 exuT hexuronate transporter ExuT 0.99 MCAODC_03880 thiE thiamine phosphate synthase — —
Escherichia coli ECRC62 0.91 BNILDI_01200 exuT hexuronate transporter ExuT 1.00 BNILDI_06000 thiE thiamine phosphate synthase — —
Escherichia fergusonii Becca 0.91 EFB2_00719 Hexuronate transporter 0.99 EFB2_04618 Thiamine-phosphate synthase low > 86
Escherichia coli Nissle 1917 0.90 ECOLIN_RS17835 hexuronate transporter ExuT 0.98 ECOLIN_RS23035 thiamine phosphate synthase low > 52
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3161 D-galactonate transporter 0.90 EX28DRAFT_4535 thiamine-phosphate diphosphorylase low > 76
Enterobacter sp. TBS_079 0.82 MPMX20_04002 Hexuronate transporter 0.89 MPMX20_00216 Thiamine-phosphate synthase low > 85
Klebsiella michiganensis M5al 0.81 BWI76_RS24735 MFS transporter 0.91 BWI76_RS01550 thiamine phosphate synthase low > 92
Pantoea sp. MT58 0.79 IAI47_02905 MFS transporter 0.69 IAI47_18090 thiamine phosphate synthase low > 76
Rahnella sp. WP5 0.78 EX31_RS12670 MFS transporter 0.71 EX31_RS16810 thiamine phosphate synthase low > 89
Pectobacterium carotovorum WPP14 0.78 HER17_RS18720 MFS transporter 0.71 HER17_RS20385 thiamine phosphate synthase low > 75
Dickeya dadantii 3937 0.78 DDA3937_RS02820 MFS transporter 0.69 DDA3937_RS01170 thiamine phosphate synthase 0.39 31
Serratia liquefaciens MT49 0.77 IAI46_22225 MFS transporter 0.72 IAI46_01315 thiamine phosphate synthase low > 86
Dickeya dianthicola 67-19 0.77 HGI48_RS02795 MFS transporter 0.68 HGI48_RS01165 thiamine phosphate synthase low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS02950 MFS transporter 0.66 DZA65_RS01210 thiamine phosphate synthase low > 75
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_14055 hexuronate transporter 0.17 AO356_15430 thiamine-phosphate pyrophosphorylase low > 104
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS23010 D-galacturonate transporter ExuT (from data) 0.15 HSERO_RS02140 thiamine-phosphate synthase low > 78
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0325 General substrate transporter:TonB box, N-terminal 0.19 Psyr_4341 thiamine-phosphate diphosphorylase low > 86
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS24120 hexuronate transporter ExuT 0.43 BPHYT_RS17770 thiamine-phosphate pyrophosphorylase — —
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0325 General substrate transporter:TonB box, N-terminal 0.19 Psyr_4341 thiamine-phosphate diphosphorylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF3092 Hexuronate transporter 0.92 GFF4199 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) low > 78
Azospirillum brasilense Sp245 0.43 AZOBR_RS23835 hexuronate transporter ExuT 0.17 AZOBR_RS10400 thiamine-phosphate synthase — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01039 putative hexuronate transporter, major facilitator superfamily 0.16 CCNA_03373 thiamin-phosphate pyrophosphorylase — —
Caulobacter crescentus NA1000 0.42 CCNA_01039 putative hexuronate transporter, major facilitator superfamily 0.16 CCNA_03373 thiamin-phosphate pyrophosphorylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_13945 MFS transporter 0.17 CA264_20425 thiamine phosphate synthase low > 74
Lysobacter sp. OAE881 0.23 ABIE51_RS03695 MFS transporter 0.18 ABIE51_RS17410 thiamine phosphate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS13025 MFS transporter 0.21 ABZR88_RS08830 thiamine phosphate synthase low > 71
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS07640 MFS transporter 0.16 A4249_RS08810 thiamine phosphate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_3106 Sugar phosphate permease 0.17 Echvi_0216 thiamine-phosphate pyrophosphorylase low > 79
Pseudomonas fluorescens FW300-N2E3 0.18 AO353_06195 hypothetical protein 0.18 AO353_06355 thiamine-phosphate pyrophosphorylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_2746 Hexuronate transporter 0.18 Pf1N1B4_2717 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) — —
Pseudomonas simiae WCS417 0.17 PS417_14775 major facilitator transporter 0.18 PS417_24605 thiamine-phosphate pyrophosphorylase low > 88
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_5056 Hexuronate transporter 0.17 Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) low > 103
Pseudomonas fluorescens SBW25 0.17 PFLU_RS26375 MFS transporter 0.18 PFLU_RS26535 thiamine phosphate synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS26375 MFS transporter 0.18 PFLU_RS26535 thiamine phosphate synthase low > 109
Pseudomonas sp. RS175 0.17 PFR28_03815 Hexuronate transporter 0.18 PFR28_03844 Thiamine-phosphate synthase low > 88
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09040 MFS transporter 0.20 ABI39_RS17750 thiamine phosphate synthase low > 72
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS13515 MFS transporter 0.20 HMPREF1058_RS03290 thiamine phosphate synthase low > 67

Not shown: 16 genomes with orthologs for b3093 only; 25 genomes with orthologs for b3993 only