Conservation of cofitness between b0060 and b3700 in Escherichia coli BW25113

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b3700 recF recombination protein F (NCBI) 0.58 3
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_03583 gap repair protein low > 60
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_04365 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 1.00 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 1.00 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 1.00 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 1.00 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 1.00 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 1.00 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 1.00 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 1.00 ECOLIN_RS21310 DNA replication/repair protein RecF low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.96 GFF1756 DNA recombination and repair protein RecF low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.96 MPMX20_00003 DNA replication and repair protein RecF low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.96 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.94 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.83 IAI47_00015 DNA replication/repair protein RecF low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.83 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.82 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.81 EX31_RS05975 DNA replication/repair protein RecF low > 89
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.82 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.84 IAI46_00015 DNA replication/repair protein RecF 0.81 6
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.82 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.81 HER17_RS00015 DNA replication/repair protein RecF low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.38 AO356_11635 recombinase RecF 0.50 3
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.39 AO353_10480 recombinase RecF 0.54 10
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.37 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.22 22
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.38 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.39 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.39 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.38 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.39 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.30 40
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.40 PP_0012 DNA replication and repair protein low > 96
Pseudomonas simiae WCS417 0.67 PS417_09565 DNA polymerase II 0.37 PS417_00015 recombinase RecF 0.19 58
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.37 Psest_0004 recF protein 0.37 1
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.56 CSW01_00065 DNA replication and repair protein RecF low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) 0.63 5
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.33 MIT1002_00003 DNA replication and repair protein RecF low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.71 11
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.46 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.25 57
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.46 Shewana3_0011 recF recombination protein F (RefSeq) low > 73

Not shown: 7 genomes with orthologs for b0060 only; 38 genomes with orthologs for b3700 only