Conservation of cofitness between b2945 and b3396 in Escherichia coli BW25113

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2945 endA DNA-specific endonuclease I (NCBI) 1.0 b3396 mrcA peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) 0.43 19
Escherichia coli ECRC62 1.00 BNILDI_09735 endA deoxyribonuclease I 1.00 BNILDI_02650 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECOR38 1.00 HEPCGN_18590 endA deoxyribonuclease I 0.99 HEPCGN_15900 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 85
Escherichia coli BL21 1.00 ECD_02775 DNA-specific endonuclease I 1.00 ECD_03248 penicillin-binding protein 1a, murein transglycosylase and transpeptidase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00773 Endonuclease-1 1.00 OHPLBJKB_00307 Penicillin-binding protein 1A low > 73
Escherichia coli ECOR27 1.00 NOLOHH_11155 endA deoxyribonuclease I 1.00 NOLOHH_08870 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 57
Escherichia coli ECRC99 0.99 KEDOAH_08855 endA deoxyribonuclease I 1.00 KEDOAH_11060 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia fergusonii Becca 0.99 EFB2_00957 Endonuclease-1 1.00 EFB2_00432 Penicillin-binding protein 1A low > 86
Escherichia coli ECRC98 0.99 JDDGAC_22915 endA deoxyribonuclease I 1.00 JDDGAC_20710 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC101 0.99 OKFHMN_19285 endA deoxyribonuclease I 1.00 OKFHMN_17080 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC102 0.99 NIAGMN_17050 endA deoxyribonuclease I 1.00 NIAGMN_14850 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC101 0.99 MCAODC_09805 endA deoxyribonuclease I 1.00 MCAODC_07610 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16385 deoxyribonuclease I 0.99 ECOLIN_RS19395 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 52
Enterobacter sp. TBS_079 0.88 MPMX20_03803 Endonuclease-1 0.90 MPMX20_04284 Penicillin-binding protein 1A low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2983 Endonuclease I 0.90 EX28DRAFT_4146 penicillin-binding protein, 1A family low > 76
Klebsiella michiganensis M5al 0.86 BWI76_RS24065 deoxyribonuclease I 0.88 BWI76_RS26125 carboxypeptidase/penicillin-binding protein 1A low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3047 Endonuclease I precursor (EC 3.1.21.1) @ Extracellular deoxyribonuclease Dns (EC 3.1.21.-) 0.94 GFF623 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Dickeya dadantii 3937 0.79 DDA3937_RS18550 deoxyribonuclease I 0.78 DDA3937_RS19580 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 74
Dickeya dianthicola ME23 0.79 DZA65_RS19620 deoxyribonuclease I 0.77 DZA65_RS20795 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA 0.61 11
Dickeya dianthicola 67-19 0.78 HGI48_RS18485 deoxyribonuclease I 0.77 HGI48_RS19710 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA 0.65 21
Rahnella sp. WP5 0.76 EX31_RS02655 deoxyribonuclease I 0.80 EX31_RS04750 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 89
Pectobacterium carotovorum WPP14 0.76 HER17_RS02645 deoxyribonuclease I 0.81 HER17_RS01745 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 75
Pantoea sp. MT58 0.75 IAI47_03625 deoxyribonuclease I 0.81 IAI47_01860 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 76
Serratia liquefaciens MT49 0.73 IAI46_21380 deoxyribonuclease I 0.80 IAI46_23740 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 86
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_02500 deoxyribonuclease 0.51 CSW01_13335 penicillin-binding protein 1A — —
Shewanella loihica PV-4 0.56 Shew_3223 deoxyribonuclease I (RefSeq) 0.46 Shew_0207 1A family penicillin-binding protein (RefSeq) — —
Shewanella sp. ANA-3 0.55 Shewana3_3443 endonuclease I (RefSeq) 0.48 Shewana3_3900 1A family penicillin-binding protein (RefSeq) — —
Shewanella oneidensis MR-1 0.55 SO0833 endA endonuclease I (NCBI ptt file) 0.48 SO0280 mrcA penicillin-binding protein 1A (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.54 Sama_0576 deoxyribonuclease I (RefSeq) 0.49 Sama_3374 penicillin-binding protein 1A (RefSeq) low > 62
Pseudomonas simiae WCS417 0.48 PS417_18420 deoxyribonuclease 0.35 PS417_01955 peptidase low > 88
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_2148 Deoxyribonuclease I 0.35 Psyr_0402 Peptidoglycan glycosyltransferase 0.32 20
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_2148 Deoxyribonuclease I 0.35 Psyr_0402 Peptidoglycan glycosyltransferase low > 86
Pseudomonas fluorescens SBW25 0.47 PFLU_RS20395 deoxyribonuclease 0.35 PFLU_RS02000 penicillin-binding protein 1A low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS20395 deoxyribonuclease 0.35 PFLU_RS02000 penicillin-binding protein 1A low > 109
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_3916 Endonuclease I precursor (EC 3.1.21.1) 0.33 PfGW456L13_282 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas stutzeri RCH2 0.47 Psest_1274 Endonuclease I 0.35 Psest_3720 penicillin-binding protein, 1A family low > 67
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_20795 deoxyribonuclease 0.36 AO353_12470 peptidase low > 101
Pseudomonas sp. RS175 0.46 PFR28_02739 Extracellular deoxyribonuclease 0.35 PFR28_05006 Penicillin-binding protein 1A low > 88
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_6039 Endonuclease I precursor (EC 3.1.21.1) 0.35 Pf1N1B4_1544 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_00985 deoxyribonuclease 0.35 AO356_09420 peptidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_158 Endonuclease I precursor (EC 3.1.21.1) 0.34 Pf6N2E2_3761 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 103
Pseudomonas sp. S08-1 0.45 OH686_20125 Endonuclease I precursor 0.35 OH686_10055 Multimodular transpeptidase-transglycosylase low > 80

Not shown: 0 genomes with orthologs for b2945 only; 45 genomes with orthologs for b3396 only