Conservation of cofitness between b0356 and b2662 in Escherichia coli BW25113

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0356 frmA alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase (NCBI) 1.0 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 0.15 19
Escherichia coli ECRC98 0.99 JDDGAC_12395 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli BL21 0.99 ECD_00310 alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase 0.99 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent low > 60
Escherichia coli ECRC99 0.99 KEDOAH_19230 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.99 MCAODC_27970 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC102 0.99 NIAGMN_06795 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.99 OKFHMN_08740 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC62 0.99 BNILDI_23065 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.99 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECOR27 0.99 NOLOHH_01650 frmA S-(hydroxymethyl)glutathione dehydrogenase 1.00 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 57
Escherichia coli ECOR38 0.99 HEPCGN_07365 frmA S-(hydroxymethyl)glutathione dehydrogenase 0.97 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03314 S-(hydroxymethyl)glutathione dehydrogenase 1.00 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02210 S-(hydroxymethyl)glutathione dehydrogenase 0.98 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase low > 52
Escherichia fergusonii Becca 0.99 EFB2_03694 S-(hydroxymethyl)glutathione dehydrogenase 0.98 EFB2_01268 4-aminobutyrate aminotransferase GabT low > 86
Lysobacter sp. OAE881 0.90 ABIE51_RS18925 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.25 ABIE51_RS02780 aspartate aminotransferase family protein low > 62
Pseudomonas stutzeri RCH2 0.89 Psest_0890 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.76 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type low > 67
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_2956 Zinc-containing alcohol dehydrogenase superfamily 0.71 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_2956 Zinc-containing alcohol dehydrogenase superfamily 0.71 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Acidovorax sp. GW101-3H11 0.87 Ac3H11_3163 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.62 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF2617 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.90 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Shewanella amazonensis SB2B 0.75 Sama_0004 alcohol dehydrogenase, zinc-binding (RefSeq) 0.67 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) low > 62
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_3630 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.73 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas simiae WCS417 0.75 PS417_06330 S-(hydroxymethyl)glutathione dehydrogenase 0.73 PS417_00900 4-aminobutyrate aminotransferase low > 88
Marinobacter adhaerens HP15 0.75 HP15_4017 formaldehyde dehydrogenase (glutathione-dependent) 0.49 HP15_3708 4-aminobutyrate aminotransferase low > 73
Shewanella loihica PV-4 0.75 Shew_1540 alcohol dehydrogenase (RefSeq) 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) low > 60
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS06395 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas sp. S08-1 0.75 OH686_18150 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.77 OH686_11880 4-aminobutyrate transaminase low > 80
Pseudomonas fluorescens SBW25 0.75 PFLU_RS06395 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_16580 S-(hydroxymethyl)glutathione dehydrogenase 0.73 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 101
Pseudomonas putida KT2440 0.74 PP_1616 formaldehyde dehydrogenase, glutathione-dependent 0.73 PP_0214 4-aminobutyrate aminotransferase low > 96
Shewanella sp. ANA-3 0.74 Shewana3_1837 alcohol dehydrogenase (RefSeq) 0.66 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_05920 S-(hydroxymethyl)glutathione dehydrogenase 0.73 AO356_10715 4-aminobutyrate aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_3044 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.73 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 103
Shewanella oneidensis MR-1 0.73 SO2054 adhC alcohol dehydrogenase class III (NCBI ptt file) 0.66 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) low > 76
Pseudomonas sp. RS175 0.73 PFR28_00420 S-(hydroxymethyl)glutathione dehydrogenase 0.73 PFR28_04756 5-aminovalerate aminotransferase DavT low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3108 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.73 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Rhodopseudomonas palustris CGA009 0.64 TX73_010080 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.50 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Dinoroseobacter shibae DFL-12 0.64 Dshi_0103 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq) 0.22 Dshi_1446 aminotransferase class-III (RefSeq) low > 64
Variovorax sp. OAS795 0.61 ABID97_RS10235 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 0.64 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase low > 91

Not shown: 47 genomes with orthologs for b0356 only; 0 genomes with orthologs for b2662 only