| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A1438 | | Sigma-24 (FecI) (NCBI) | 1.0 | Rru_A0571 | | hypothetical protein (NCBI) | 0.69 | 18 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_2727 | | FIG006045: Sigma factor, ECF subfamily | 0.21 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 87 |
| Azospirillum brasilense Sp245 | 0.38 | AZOBR_RS27315 | | RNA polymerase sigma 70 | 0.48 | AZOBR_RS11890 | | 16S rRNA methyltransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_03088 | | putative RNA polymerase sigma factor FecI | 0.50 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | low | > 112 |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_21 | | Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis | 0.21 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 103 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_17630 | | RNA polymerase sigma factor | 0.22 | PS417_26545 | | 16S rRNA methyltransferase | low | > 88 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_02867 | | putative RNA polymerase sigma factor FecI | 0.22 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_133 | | Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis | 0.22 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Pseudomonas fluorescens SBW25 | 0.28 | PFLU_RS19420 | | sigma-70 family RNA polymerase sigma factor | 0.22 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.28 | PFLU_RS19420 | | sigma-70 family RNA polymerase sigma factor | 0.22 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_22495 | | RNA polymerase subunit sigma-24 | 0.22 | AO356_13565 | | 16S rRNA methyltransferase | low | > 104 |
| Variovorax sp. SCN45 | 0.28 | GFF791 | | RNA polymerase sigma factor RpoE | 0.15 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS00640 | | sigma-70 family RNA polymerase sigma factor | 0.17 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS14615 | | RNA polymerase sigma factor | 0.18 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_3549 | | RNA polymerase sigma factor, sigma-70 family | 0.37 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | low | > 68 |
| Ralstonia solanacearum IBSBF1503 | 0.26 | RALBFv3_RS06665 | | RNA polymerase sigma factor | 0.18 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.26 | UW163_RS06960 | | RNA polymerase sigma factor | 0.18 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS09420 | | RNA polymerase sigma factor | 0.17 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 59 |
| Dechlorosoma suillum PS | 0.26 | Dsui_1673 | | RNA polymerase sigma factor, sigma-70 family | 0.16 | Dsui_1568 | | RNA methyltransferase, RsmE family | — | — |
| Ralstonia solanacearum PSI07 | 0.26 | RPSI07_RS10560 | | RNA polymerase sigma factor | 0.17 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 81 |
| Agrobacterium fabrum C58 | 0.24 | Atu3692 | | sigma factor | 0.36 | Atu0657 | | hypothetical protein | low | > 89 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS14885 | | DNA-directed RNA polymerase sigma-70 factor | 0.19 | RR42_RS17590 | | 16S rRNA methyltransferase | low | > 128 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01187 | | RNA polymerase ECF-type sigma factor | 0.34 | CCNA_03528 | | RNA methyltransferase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01187 | | RNA polymerase ECF-type sigma factor | 0.34 | CCNA_03528 | | RNA methyltransferase | low | > 67 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.24 | GFF1181 | | FIG006045: Sigma factor, ECF subfamily | 0.17 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 90 |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_006850 | | RNA polymerase sigma factor | 0.36 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.22 | Psest_4339 | | DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog | 0.21 | Psest_0305 | | RNA methyltransferase, RsmE family | low | > 67 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS03525 | | sigma-70 family RNA polymerase sigma factor | 0.15 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Rahnella sp. WP5 | 0.18 | EX31_RS16485 | | sigma-70 family RNA polymerase sigma factor | 0.17 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 89 |
Not shown: 8 genomes with orthologs for Rru_A1438 only; 56 genomes with orthologs for Rru_A0571 only