Homologs of Psyr_1107 from Pseudomonas syringae pv. syringae B728a

Sigma-70 region 2
SEED: FIG006045: Sigma factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 73 91
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04694 ECF RNA polymerase sigma factor SigE insig. 70 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 71 91
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1886 FIG006045: Sigma factor, ECF subfamily insig. 70 91
o Pseudomonas fluorescens SBW25 PFLU_RS24340 sigma-70 family RNA polymerase sigma factor insig. 69 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24340 sigma-70 family RNA polymerase sigma factor strong 69 92
o Pseudomonas sp. DMC3 GFF5154 hypothetical protein insig. 70 90
o Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 72 90
o Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 70 90
o Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 70 90
o Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 69 92
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 71 90
o Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 71 90
o Pseudomonas sp. RS175 PFR28_00559 ECF RNA polymerase sigma factor SigE insig. 72 91
o Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 45 88
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 43 84
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 39 88
o Rhodopseudomonas palustris CGA009 TX73_012350 RNA polymerase sigma factor insig. 37 86
o Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 36 91
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 35 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 36 79
  Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 35 89
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 34 78
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI cofit 34 89
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 84
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 35 91
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 30 89
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 34 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 34 89
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 33 89
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 33 84
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 36 89
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma insig. 33 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 33 89
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 33 88
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 35 89
o Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 28 90
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 31 89
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 33 85
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 37 76
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 36 76
o Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 32 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 34 89
  Sphingobium sp. HT1-2 GFF5333 sigma factor cofit 32 76
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 27 89
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 34 74
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 32 85
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 31 81
  Pseudomonas sp. BP01 JOY50_RS19220 RNA polymerase sigma factor insig. 31 81
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 32 79
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 33 78
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 33 78
o Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 32 88
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 30 87
  Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 29 86
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 32 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 32 87
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 34 89
  Sphingobium sp. HT1-2 GFF5162 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 29 86
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 26 88
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 32 82
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein insig. 33 78
  Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 32 82
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 26 80
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 33 78
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 31 84
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 33 78
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 27 94
  Pseudomonas aeruginosa PA14 IKLFDK_11920 pyoverdine signaling pathway sigma factor PvdS insig. 32 82
  Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 31 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 31 82
  Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 31 82
  Pseudomonas sp. SVBP6 COO64_RS18740 RNA polymerase factor sigma-70 cofit 32 85
  Pseudomonas sp. DMC3 GFF4554 hypothetical protein cofit 32 82
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 31 86
  Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 32 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 32 82
  Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 32 82
  Sphingobium sp. HT1-2 GFF1845 hypothetical protein cofit 30 83
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 30 81
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 29 80
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 34 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09435 RNA polymerase sigma factor insig. 31 88
  Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 33 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 33 76
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 29 82
  Sphingobium sp. HT1-2 GFF2039 RNA polymerase ECF-type sigma factor cofit 34 79
  Acinetobacter baumannii LAC-4 RR41_RS08490 sigma-70 family RNA polymerase sigma factor strong 27 83
  Phocaeicola dorei CL03T12C01 ABI39_RS00660 sigma-70 family RNA polymerase sigma factor insig. 32 71
  Alteromonas macleodii MIT1002 MIT1002_03920 putative RNA polymerase sigma factor FecI cofit 27 87
  Sphingobium sp. HT1-2 GFF3691 RNA polymerase ECF-type sigma factor cofit 34 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 78
  Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 31 79
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04111 hypothetical protein cofit 30 82
  Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 27 90
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 35 88
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 35 88
  Pseudomonas sp. BP01 JOY50_RS00025 RNA polymerase factor sigma-70 insig. 31 82