Homologs of HSERO_RS14150 from Herbaspirillum seropedicae SmR1

RNA polymerase sigma factor
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS14150 RNA polymerase sigma factor insig. 100 100
o Paraburkholderia graminis OAS925 ABIE53_002674 RNA polymerase sigma factor (sigma-70 family) insig. 58 99
o Pectobacterium carotovorum WPP14 HER17_RS15360 sigma-70 family RNA polymerase sigma factor insig. 55 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS19630 RNA polymerase sigma factor sig. 58 96
o Ralstonia solanacearum UW163 UW163_RS19545 RNA polymerase sigma factor insig. 58 96
o Ralstonia solanacearum GMI1000 RS_RS21190 RNA polymerase sigma factor cofit 56 96
o Ralstonia solanacearum PSI07 RPSI07_RS03580 RNA polymerase sigma factor insig. 56 96
o Pseudomonas aeruginosa MRSN321 DY961_RS16440 sigma-70 family RNA polymerase sigma factor insig. 53 96
o Pseudomonas aeruginosa PA14 IKLFDK_10030 RNA polymerase subunit sigma insig. 53 96
o Pseudomonas aeruginosa PUPa3 DQ20_RS38760 sigma-70 family RNA polymerase sigma factor insig. 53 96
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 47 95
  Pseudomonas aeruginosa MRSN321 DY961_RS16685 sigma-70 family RNA polymerase sigma factor sig. 48 96
  Pseudomonas aeruginosa PA14 IKLFDK_10240 RNA polymerase subunit sigma sig. 48 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS38970 sigma-70 family RNA polymerase sigma factor insig. 48 96
o Pseudomonas orientalis W4I3 QF045_RS24135 sigma-70 family RNA polymerase sigma factor insig. 48 96
  Dickeya dadantii 3937 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor insig. 47 95
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 46 95
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 46 95
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 46 95
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 46 95
  Pseudomonas segetis P6 MPMX49_00743 putative RNA polymerase sigma factor FecI insig. 50 96
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 48 96
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 48 96
  Pseudomonas sp. SVBP6 COO64_RS08375 sigma-70 family RNA polymerase sigma factor insig. 45 97
  Pseudomonas sp. SVBP6 COO64_RS22780 RNA polymerase sigma factor insig. 48 96
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 45 97
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 47 95
  Pseudomonas sp. BP01 JOY50_RS17880 RNA polymerase sigma factor insig. 46 96
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 46 96
  Pseudomonas sp. RS175 PFR28_04114 putative RNA polymerase sigma factor FecI insig. 46 96
  Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 45 95
  Pseudomonas segetis P6 MPMX49_02232 putative RNA polymerase sigma factor FecI insig. 46 95
  Herbaspirillum seropedicae SmR1 HSERO_RS17635 RNA polymerase sigma-70 factor sig. 45 97
  Pseudomonas sp. BP01 JOY50_RS10405 sigma-70 family RNA polymerase sigma factor insig. 45 96
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01226 putative RNA polymerase sigma factor FecI cofit 42 96
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_563 RNA polymerase sigma-70 factor insig. 43 97
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2904 probable sigma-70 factor, ECF subfamily insig. 51 81
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 44 97
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 42 96
  Pseudomonas sp. RS175 PFR28_00232 putative RNA polymerase sigma factor FecI insig. 42 96
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 44 96
  Pseudomonas aeruginosa MRSN321 DY961_RS22365 RNA polymerase sigma factor insig. 46 96
  Pseudomonas aeruginosa PA14 IKLFDK_23065 RNA polymerase sigma factor sig. 46 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS36960 RNA polymerase sigma factor insig. 46 96
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05333 putative RNA polymerase sigma factor FecI insig. 45 96
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 43 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 42 96
  Variovorax sp. SCN45 GFF1524 FIG006045: Sigma factor, ECF subfamily insig. 40 96
  Variovorax sp. SCN45 GFF2431 RNA polymerase ECF-type sigma factor insig. 41 96
  Pseudomonas sp. DMC3 GFF1889 putative RNA polymerase sigma factor FecI cofit 41 96
  Pseudomonas fluorescens FW300-N2C3 AO356_14080 RNA polymerase subunit sigma insig. 46 96
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 44 95
  Variovorax sp. SCN45 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 42 98
  Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 40 96
  Pseudomonas aeruginosa MRSN321 DY961_RS13375 sigma-70 family RNA polymerase sigma factor insig. 44 97
  Pseudomonas aeruginosa PA14 IKLFDK_20100 RNA polymerase subunit sigma sig. 44 97
  Pseudomonas aeruginosa PUPa3 DQ20_RS48675 sigma-70 family RNA polymerase sigma factor insig. 44 97
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 44 95
  Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 40 96
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 40 96
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 46 97
  Pseudomonas sp. DMC3 GFF2735 putative RNA polymerase sigma factor FecI cofit 44 95
  Pseudomonas orientalis W4I3 QF045_RS00470 RNA polymerase sigma factor insig. 44 96
  Pseudomonas simiae WCS417 PS417_26065 RNA polymerase sigma factor insig. 44 96
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 43 95
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1008 FIG006045: Sigma factor, ECF subfamily insig. 42 96
  Pseudomonas simiae WCS417 PS417_05100 RNA polymerase sigma factor sig. 40 96
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 46 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 46 95
  Pseudomonas sp. DMC3 GFF570 putative RNA polymerase sigma factor FecI cofit 43 95
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 45 97
  Pseudomonas fluorescens SBW25 PFLU_RS27705 RNA polymerase sigma factor insig. 43 96
  Pseudomonas fluorescens SBW25-INTG PFLU_RS27705 RNA polymerase sigma factor insig. 43 96
  Pseudomonas syringae pv. syringae B728a Psyr_2580 Sigma-70 region 2 no data 44 95
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2580 Sigma-70 region 2 insig. 44 95
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 43 99
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 43 99
  Pseudomonas sp. SVBP6 COO64_RS11370 sigma-70 family RNA polymerase sigma factor insig. 40 96
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 42 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1135 RNA polymerase sigma-70 factor, ECF subfamily insig. 48 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1919 RNA polymerase sigma-70 factor insig. 44 95
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02847 putative RNA polymerase sigma factor FecI no data 45 95
  Pseudomonas simiae WCS417 PS417_12935 RNA polymerase sigma factor insig. 44 95
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2474 RNA polymerase sigma-70 factor, ECF subfamily insig. 44 96
  Pseudomonas sp. RS175 PFR28_01871 putative RNA polymerase sigma factor FecI sig. 44 97
  Pseudomonas fluorescens FW300-N2C3 AO356_26280 RNA polymerase subunit sigma insig. 45 95
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 40 96
  Pseudomonas segetis P6 MPMX49_03224 putative RNA polymerase sigma factor FecI insig. 41 95
  Pseudomonas sp. DMC3 GFF87 putative RNA polymerase sigma factor FecI insig. 45 96
  Pseudomonas sp. SVBP6 COO64_RS10870 sigma-70 family RNA polymerase sigma factor insig. 44 95
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 42 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4748 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 89
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 43 95
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 41 96
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 41 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 41 96
  Pseudomonas putida KT2440 PP_3577 RNA polymerase, sigma 19 factor insig. 43 95
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6050 RNA polymerase sigma-70 factor, ECF subfamily insig. 41 95
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 42 96
  Pseudomonas sp. BP01 JOY50_RS19840 sigma-70 family RNA polymerase sigma factor no data 42 96