Homologs of PS417_06880 from Pseudomonas simiae WCS417

RNA polymerase sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 94 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 94 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein insig. 91 100
o Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 73 100
o Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma insig. 57 88
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 39 87
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 38 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 37 87
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 35 90
o Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 37 88
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 37 87
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 39 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 35 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 37 87
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 36 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 36 87
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 39 86
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 37 86
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 38 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 37 82
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 34 97
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 34 97
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 37 86
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 36 91
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 37 85
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 37 97
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 36 95
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 35 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 36 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 39 89
  Acinetobacter baumannii LAC-4 RR41_RS08490 sigma-70 family RNA polymerase sigma factor strong 32 90
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 37 93
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 35 84
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 35 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 88
  Pseudomonas sp. SVBP6 COO64_RS25100 sigma-70 family RNA polymerase sigma factor insig. 36 85
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 34 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 35 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 36 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 33 92
  Pseudomonas sp. DMC3 GFF4294 putative RNA polymerase sigma factor FecI insig. 34 90
  Pseudomonas sp. SVBP6 COO64_RS04025 sigma-70 family RNA polymerase sigma factor insig. 34 88
  Paraburkholderia graminis OAS925 ABIE53_002674 RNA polymerase sigma factor (sigma-70 family) insig. 34 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 94
  Pseudomonas segetis P6 MPMX49_03224 putative RNA polymerase sigma factor FecI insig. 33 92
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 39 85
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 35 79
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 34 88
  Pseudomonas aeruginosa PA14 IKLFDK_11700 pyoverdine signaling pathway sigma factor FpvI sig. 37 85
  Pseudomonas sp. BP01 JOY50_RS02515 sigma-70 family RNA polymerase sigma factor insig. 35 85
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 34 91
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 35 82
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 35 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 35 82
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 33 94
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 35 94
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 35 88
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04645 sigma-70 family RNA polymerase sigma factor cofit 32 88
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 34 82
  Pseudomonas syringae pv. syringae B728a Psyr_1040 RNA polymerase sigma factor, ECF subfamily strong 32 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1040 RNA polymerase sigma factor, ECF subfamily insig. 32 85
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 33 86
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 34 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 32 86
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 32 86
  Pseudomonas sp. SVBP6 COO64_RS22780 RNA polymerase sigma factor insig. 32 95
  Pseudomonas sp. RS175 PFR28_04775 putative RNA polymerase sigma factor FecI insig. 40 79
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 33 91
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 32 91
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 34 87
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 36 84
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 33 79
  Pseudomonas fluorescens FW300-N2C3 AO356_10620 RNA polymerase subunit sigma insig. 39 79
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein insig. 33 82
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 33 90
  Pseudomonas sp. BP01 JOY50_RS22945 sigma-70 family RNA polymerase sigma factor insig. 37 82
  Pseudomonas segetis P6 MPMX49_02232 putative RNA polymerase sigma factor FecI insig. 36 79
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3991 RNA polymerase sigma-70 factor, ECF subfamily insig. 39 79
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 33 80
  Pseudomonas fluorescens FW300-N2C3 AO356_14080 RNA polymerase subunit sigma insig. 31 95
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 31 88
  Pseudomonas sp. SVBP6 COO64_RS14455 sigma-70 family RNA polymerase sigma factor insig. 35 79
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 34 91
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 37 83
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 32 92
  Pseudomonas sp. BP01 JOY50_RS11985 RNA polymerase sigma factor insig. 30 94
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 33 80
  Pseudomonas aeruginosa PA14 IKLFDK_20100 RNA polymerase subunit sigma insig. 32 79
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 39 71
  Pseudomonas sp. BP01 JOY50_RS24800 sigma-70 family RNA polymerase sigma factor insig. 34 80
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 34 87
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 33 89
  Methylophilus sp. DMC18 GFF1870 hypothetical protein insig. 30 82
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 33 85
  Pseudomonas sp. DMC3 GFF1889 putative RNA polymerase sigma factor FecI cofit 32 79
  Methylophilus sp. DMC18 GFF1862 putative RNA polymerase sigma factor FecI insig. 32 89
  Pseudomonas putida KT2440 PP_0667 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 92
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 32 85
  Pseudomonas putida KT2440 PP_0162 RNA polymerase sigma-70 factor, ECF subfamily sig. 35 91