Conservation of cofitness between Xcc-8004.1566.1 and Xcc-8004.4371.1 in Xanthomonas campestris pv. campestris strain 8004

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1566.1 Putative activity regulator of membrane protease YbbK 1.0 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.33 5
Lysobacter sp. OAE881 0.60 ABIE51_RS16375 NfeD family protein 0.77 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS10540 NfeD family protein 0.64 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28890 NfeD family protein 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28890 NfeD family protein 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas simiae WCS417 0.40 PS417_27230 membrane protein implicated in regulation of membrane protease activity 0.53 PS417_04590 methyltransferase low > 88
Agrobacterium fabrum C58 0.39 Atu3773 hypothetical protein 0.37 Atu0302 tetrapyrrole methylase family protein low > 89
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_11260 ybbJ Membrane protein implicated in regulation of membrane protease activity 0.61 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 52
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS04375 NfeD family protein 0.61 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS04150 NfeD family protein 0.61 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_13050 hypothetical protein 0.54 AO356_17110 methyltransferase low > 104
Pseudomonas sp. S08-1 0.38 OH686_11150 Putative activity regulator of membrane protease YbbK 0.53 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Sinorhizobium meliloti 1021 0.38 SMc04021 hypothetical protein 0.38 SMc00416 hypothetical protein — —
Azospirillum brasilense Sp245 0.36 AZOBR_RS12585 membrane protein 0.36 AZOBR_RS02155 16S rRNA methyltransferase low > 97
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4489 Putative activity regulator of membrane protease YbbK 0.55 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0708 Membrane protein implicated in regulation of membrane protease activity 0.52 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 40
Rhizobium sp. OAE497 0.35 ABIE40_RS16235 NfeD family protein 0.40 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 107
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_906 Putative activity regulator of membrane protease YbbK 0.52 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Bosea sp. OAE506 0.34 ABIE41_RS08415 NfeD family protein 0.42 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 77
Rhodopseudomonas palustris CGA009 0.33 TX73_004520 NfeD family protein 0.37 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Dickeya dianthicola ME23 0.33 DZA65_RS06235 NfeD family protein 0.50 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 3
Dickeya dianthicola 67-19 0.33 HGI48_RS05900 NfeD family protein 0.51 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 71
Dickeya dadantii 3937 0.33 DDA3937_RS05855 NfeD family protein 0.51 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.30 65
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0898 Membrane protein implicated in regulation of membrane protease activity 0.40 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 68
Erwinia tracheiphila SCR3 0.31 LU632_RS15285 NfeD family protein 0.52 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pectobacterium carotovorum WPP14 0.29 HER17_RS15615 NfeD family protein 0.50 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Klebsiella michiganensis M5al 0.29 BWI76_RS06915 membrane protein 0.49 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase low > 92
Escherichia coli ECOR38 0.28 HEPCGN_06640 ybbJ Inner membrane protein YbbJ 0.53 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli ECRC62 0.28 BNILDI_22415 ybbJ Inner membrane protein YbbJ 0.52 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Escherichia coli ECOR27 0.28 NOLOHH_00995 ybbJ Inner membrane protein YbbJ 0.52 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03186 Inner membrane protein YbbJ 0.53 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I low > 73
Escherichia coli BW25113 0.28 b0488 ybbJ conserved inner membrane protein (RefSeq) 0.53 b3146 yraL predicted methyltransferase (NCBI) low > 76
Escherichia coli BL21 0.28 ECD_00439 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX 0.53 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 61
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2472 Membrane protein implicated in regulation of membrane protease activity 0.51 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Escherichia fergusonii Becca 0.28 EFB2_03567 Inner membrane protein YbbJ 0.53 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli ECRC102 0.28 NIAGMN_06055 ybbJ Inner membrane protein YbbJ 0.53 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC100 0.28 OKFHMN_08005 ybbJ Inner membrane protein YbbJ 0.53 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC98 0.28 JDDGAC_11650 ybbJ Inner membrane protein YbbJ 0.53 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Escherichia coli ECRC99 0.28 KEDOAH_19965 ybbJ Inner membrane protein YbbJ 0.53 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC101 0.28 MCAODC_27220 ybbJ Inner membrane protein YbbJ 0.53 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli Nissle 1917 0.27 ECOLIN_RS02890 NfeD family protein 0.53 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Enterobacter sp. TBS_079 0.27 MPMX20_01086 Inner membrane protein YbbJ 0.51 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF4406 Putative activity regulator of membrane protease YbbK 0.51 GFF1521 rRNA small subunit methyltransferase I low > 78
Pantoea sp. MT58 0.24 IAI47_14390 NfeD family protein 0.48 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Serratia liquefaciens MT49 0.24 IAI46_05320 NfeD family protein 0.48 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86

Not shown: 1 genomes with orthologs for Xcc-8004.1566.1 only; 53 genomes with orthologs for Xcc-8004.4371.1 only