Conservation of cofitness between Xcc-8004.1434.1 and Xcc-8004.2957.1 in Xanthomonas campestris pv. campestris strain 8004

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC 1.0 Xcc-8004.2957.1 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) 0.57 10
Lysobacter sp. OAE881 0.76 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator 0.52 ABIE51_RS17520 bifunctional aspartate kinase/homoserine dehydrogenase I low > 62
Shewanella oneidensis MR-1 0.55 SO2432 conserved hypothetical protein TIGR01033 (NCBI ptt file) 0.31 SO3415 thrA aspartokinase I/homoserine dehydrogenase, threonine-sensitive (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.55 Shewana3_1954 hypothetical protein (RefSeq) 0.31 Shewana3_1139 thrA bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq) low > 73
Dickeya dadantii 3937 0.55 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator 0.33 DDA3937_RS18415 bifunctional aspartate kinase/homoserine dehydrogenase I low > 74
Dickeya dianthicola ME23 0.55 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator 0.33 DZA65_RS19485 bifunctional aspartate kinase/homoserine dehydrogenase I low > 75
Dickeya dianthicola 67-19 0.55 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.33 HGI48_RS18345 bifunctional aspartate kinase/homoserine dehydrogenase I low > 71
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1123 DNA-binding regulatory protein, YebC/PmpR family 0.18 B158DRAFT_2460 aspartate kinase (EC 2.7.2.4) low > 40
Pectobacterium carotovorum WPP14 0.54 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator 0.33 HER17_RS02795 bifunctional aspartate kinase/homoserine dehydrogenase I low > 75
Shewanella amazonensis SB2B 0.54 Sama_1842 hypothetical protein (RefSeq) 0.29 Sama_0905 thrA bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq) low > 62
Serratia liquefaciens MT49 0.54 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator 0.33 IAI46_03030 bifunctional aspartate kinase/homoserine dehydrogenase I low > 86
Erwinia tracheiphila SCR3 0.54 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator 0.33 LU632_RS02610 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 74
Shewanella loihica PV-4 0.54 Shew_2078 hypothetical protein (RefSeq) 0.31 Shew_1079 thrA bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq) — —
Rahnella sp. WP5 0.53 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator 0.34 EX31_RS03945 bifunctional aspartate kinase/homoserine dehydrogenase I low > 89
Enterobacter sp. TBS_079 0.53 MPMX20_02769 putative transcriptional regulatory protein YebC 0.32 MPMX20_00710 Bifunctional aspartokinase/homoserine dehydrogenase 1 low > 85
Escherichia coli ECRC62 0.53 BNILDI_15490 putative transcriptional regulatory protein YebC 0.33 BNILDI_08160 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 75
Escherichia coli ECRC98 0.53 JDDGAC_00830 putative transcriptional regulatory protein YebC 0.33 JDDGAC_14705 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 86
Escherichia fergusonii Becca 0.53 EFB2_02078 putative transcriptional regulatory protein YebC 0.33 EFB2_04041 Bifunctional aspartokinase/homoserine dehydrogenase 1 low > 86
Escherichia coli ECOR38 0.53 HEPCGN_04665 putative transcriptional regulatory protein YebC 0.33 HEPCGN_09115 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 87
Escherichia coli ECOR27 0.53 NOLOHH_16700 putative transcriptional regulatory protein YebC 0.33 NOLOHH_03440 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01864 putative transcriptional regulatory protein YebC 0.33 OHPLBJKB_03658 Bifunctional aspartokinase/homoserine dehydrogenase 1 low > 73
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10380 YebC/PmpR family DNA-binding transcriptional regulator 0.33 ECOLIN_RS00010 bifunctional aspartate kinase/homoserine dehydrogenase I low > 55
Escherichia coli ECRC101 0.53 MCAODC_19150 putative transcriptional regulatory protein YebC 0.33 MCAODC_01625 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 87
Escherichia coli ECRC102 0.53 NIAGMN_01805 putative transcriptional regulatory protein YebC 0.33 NIAGMN_08960 thrA bifunctional aspartate kinase/homoserine dehydrogenase I — —
Escherichia coli BL21 0.53 ECD_01835 UPF0082 family protein 0.33 ECD_00002 Bifunctional aspartokinase/homoserine dehydrogenase 1 low > 61
Escherichia coli ECRC99 0.53 KEDOAH_01850 putative transcriptional regulatory protein YebC 0.33 KEDOAH_17045 thrA bifunctional aspartate kinase/homoserine dehydrogenase I — —
Escherichia coli ECRC100 0.53 OKFHMN_26255 putative transcriptional regulatory protein YebC 0.33 OKFHMN_11110 thrA bifunctional aspartate kinase/homoserine dehydrogenase I low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF1645 FIG000859: hypothetical protein YebC 0.32 GFF1078 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) low > 78
Escherichia coli BW25113 0.53 b1864 yebC hypothetical protein (NCBI) 0.33 b0002 thrA bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) low > 76
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family 0.32 EX28DRAFT_3614 aspartate kinase (EC 2.7.2.4) low > 76
Pantoea sp. MT58 0.53 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator 0.33 IAI47_16215 bifunctional aspartate kinase/homoserine dehydrogenase I low > 76
Klebsiella michiganensis M5al 0.52 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator 0.33 BWI76_RS04245 bifunctional aspartate kinase/homoserine dehydrogenase I — —
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_14085 transcriptional regulator 0.31 CSW01_11975 bifunctional aspartate kinase/homoserine dehydrogenase I low > 62
Alteromonas macleodii MIT1002 0.32 MIT1002_00845 putative transcriptional regulatory protein YeeN 0.33 MIT1002_03086 Aspartokinase I/homoserine dehydrogenase I low > 70
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS16620 YebC/PmpR family DNA-binding transcriptional regulator 0.29 HMPREF1181_RS00060 bifunctional aspartate kinase/homoserine dehydrogenase I low > 56
Bacteroides ovatus ATCC 8483 0.32 BACOVA_02249 DNA-binding regulatory protein, YebC/PmpR family 0.29 BACOVA_03021 homoserine dehydrogenase low > 94
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS03510 YebC/PmpR family DNA-binding transcriptional regulator 0.31 HMPREF1058_RS14720 bifunctional aspartate kinase/homoserine dehydrogenase I low > 67
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS17640 YebC/PmpR family DNA-binding transcriptional regulator 0.30 ABI39_RS10430 bifunctional aspartate kinase/homoserine dehydrogenase I low > 72
Bacteroides thetaiotaomicron VPI-5482 0.32 BT0627 conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) 0.29 BT2403 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS22270 YebC/PmpR family DNA-binding transcriptional regulator 0.34 ABZR88_RS18950 bifunctional aspartate kinase/homoserine dehydrogenase I — —
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS09835 YebC/PmpR family DNA-binding transcriptional regulator 0.29 HMPREF1078_RS10385 bifunctional aspartate kinase/homoserine dehydrogenase I low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS15330 YebC/PmpR family DNA-binding transcriptional regulator 0.34 CA265_RS23475 aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_1239 DNA-binding regulatory protein, YebC/PmpR family 0.36 Echvi_2000 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) low > 79

Not shown: 59 genomes with orthologs for Xcc-8004.1434.1 only; 0 genomes with orthologs for Xcc-8004.2957.1 only