| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_012035 | | ABC transporter substrate-binding protein | 1.0 | TX73_019710 | | branched-chain amino acid ABC transporter permease | 0.39 | 18 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS23015 | | peptide ABC transporter substrate-binding protein | 0.69 | AZOBR_RS08235 | | L-proline and D-alanine ABC transporter, permease component 1 (from data) | low | > 97 |
| Azospirillum sp. SherDot2 | 0.57 | MPMX19_02825 | | Oligopeptide-binding protein AppA | 0.68 | MPMX19_06002 | | High-affinity branched-chain amino acid transport system permease protein LivH | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS27430 | | peptide ABC transporter substrate-binding protein | 0.55 | RR42_RS14420 | | branched-chain amino acid transporter permease subunit LivH | low | > 128 |
| Bosea sp. OAE506 | 0.47 | ABIE41_RS02550 | | ABC transporter substrate-binding protein | 0.64 | ABIE41_RS13635 | | branched-chain amino acid ABC transporter permease LivH | low | > 77 |
| Agrobacterium fabrum C58 | 0.35 | Atu3433 | | oligopeptide ABC transporter substrate-binding protein | 0.65 | Atu2427 | | ABC transporter, membrane spanning protein | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS16445 | | ABC transporter substrate-binding protein | 0.53 | HER17_RS00500 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_006408 | | peptide/nickel transport system substrate-binding protein | 0.41 | ABIE53_003285 | | branched-chain amino acid transport system permease protein | low | > 113 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS10915 | | ABC transporter substrate-binding protein | 0.54 | PFLU_RS02730 | | branched-chain amino acid ABC transporter permease | low | > 109 |
| Dickeya dianthicola ME23 | 0.33 | DZA65_RS12365 | | ABC transporter substrate-binding protein | 0.53 | DZA65_RS21735 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS10915 | | ABC transporter substrate-binding protein | 0.54 | PFLU_RS02730 | | branched-chain amino acid ABC transporter permease | low | > 109 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS11825 | | ABC transporter substrate-binding protein | 0.53 | HGI48_RS20725 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 71 |
| Variovorax sp. SCN45 | 0.32 | GFF4128 | | ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) | 0.40 | GFF6033 | | Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) | low | > 127 |
| Sinorhizobium meliloti 1021 | 0.31 | SMa2075 | | ABC transporter substrate-binding protein | 0.67 | SMc01951 | | high-affinity branched-chain amino acid ABC transporter permease | low | > 103 |
| Rahnella sp. WP5 | 0.17 | EX31_RS02025 | | ABC transporter substrate-binding protein | 0.55 | EX31_RS15620 | | branched-chain amino acid ABC transporter permease | low | > 89 |
| Rhizobium sp. OAE497 | 0.16 | ABIE40_RS24180 | | ABC transporter substrate-binding protein | 0.63 | ABIE40_RS14715 | | branched-chain amino acid ABC transporter permease LivH | low | > 107 |
| Dickeya dadantii 3937 | 0.16 | DDA3937_RS06935 | | ABC transporter substrate-binding protein | 0.53 | DDA3937_RS00665 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 74 |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS19180 | | diguanylate cyclase | 0.50 | BWI76_RS26345 | | branched-chain amino acid ABC transporter permease LivH | low | > 92 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_16620 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | MCAODC_07275 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 87 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_25450 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | NIAGMN_14515 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC62 | 0.16 | BNILDI_17445 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | BNILDI_02965 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Escherichia coli ECRC99 | 0.16 | KEDOAH_27125 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | KEDOAH_11395 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_01320 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | OKFHMN_16745 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 80 |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_26475 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | HEPCGN_15565 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 87 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_03810 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | JDDGAC_20375 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_02230 | | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | OHPLBJKB_00246 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 73 |
| Escherichia coli BW25113 | 0.16 | b1487 | ddpA | D-ala-D-a la transporter subunit (NCBI) | 0.49 | b3457 | livH | leucine/isoleucine/valine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.16 | ECD_01445 | | D,D-dipeptide ABC transporter periplasmic binding protein | 0.49 | ECD_03306 | | branched-chain amino acid ABC transporter permease | low | > 61 |
| Escherichia coli ECOR27 | 0.15 | NOLOHH_18960 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.49 | NOLOHH_08540 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Enterobacter sp. TBS_079 | 0.15 | MPMX20_02356 | | putative D,D-dipeptide-binding periplasmic protein DdpA | 0.56 | MPMX20_02821 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 85 |
| Variovorax sp. OAS795 | 0.15 | ABID97_RS11660 | | ABC transporter substrate-binding protein | 0.65 | ABID97_RS27580 | | branched-chain amino acid ABC transporter permease LivH | low | > 91 |
| Pseudomonas fluorescens FW300-N2E3 | 0.15 | AO353_21850 | | diguanylate cyclase | 0.55 | AO353_13345 | | branched-chain amino acid transporter permease subunit LivH | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.15 | Psyr_4211 | | extracellular solute-binding protein, family 5 | 0.55 | Psyr_0598 | | amino acid/amide ABC transporter membrane protein 1, HAAT family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.15 | Psyr_4211 | | extracellular solute-binding protein, family 5 | 0.55 | Psyr_0598 | | amino acid/amide ABC transporter membrane protein 1, HAAT family | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.15 | Pf6N2E2_3427 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein | 0.54 | Pf6N2E2_3579 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 103 |
| Serratia liquefaciens MT49 | 0.15 | IAI46_12025 | | ABC transporter substrate-binding protein | 0.55 | IAI46_00965 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.15 | Pf1N1B4_5106 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein | 0.55 | Pf1N1B4_1381 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.14 | AO356_07725 | | diguanylate cyclase | 0.54 | AO356_08495 | | branched-chain amino acid transporter permease subunit LivH | low | > 104 |
| Synechococcus elongatus PCC 7942 | 0.14 | Synpcc7942_1169 | | oligopeptide-binding protein of oligopeptide ABC transporter | 0.28 | Synpcc7942_2495 | natD | integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD | low | > 38 |
| Pseudomonas simiae WCS417 | 0.14 | PS417_27765 | | peptide ABC transporter substrate-binding protein | 0.54 | PS417_02660 | | branched-chain amino acid transporter permease subunit LivH | low | > 88 |
| Ralstonia sp. UNC404CL21Col | 0.13 | ABZR87_RS14620 | | ABC transporter substrate-binding protein | 0.37 | ABZR87_RS00310 | | branched-chain amino acid ABC transporter permease | low | > 80 |
| Pseudomonas putida KT2440 | 0.13 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | 0.55 | PP_4866 | | High-affinity branched-chain amino acid transport system permease protein BraD | low | > 96 |
Not shown: 8 genomes with orthologs for TX73_012035 only; 29 genomes with orthologs for TX73_019710 only