Conservation of cofitness between TX73_008175 and TX73_003600 in Rhodopseudomonas palustris CGA009

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_008175 glutamate racemase 1.0 TX73_003600 phosphonate metabolism transcriptional regulator PhnF 0.49 19
Sinorhizobium meliloti 1021 0.48 SMc00483 glutamate racemase 0.37 SM_b20758 ArsR family transcriptional regulator low > 103
Rhizobium sp. OAE497 0.46 ABIE40_RS10265 glutamate racemase 0.40 ABIE40_RS00575 phosphonate metabolism transcriptional regulator PhnF low > 107
Bosea sp. OAE506 0.46 ABIE41_RS13570 glutamate racemase 0.35 ABIE41_RS07695 phosphonate metabolism transcriptional regulator PhnF low > 77
Agrobacterium fabrum C58 0.45 Atu1867 glutamate racemase 0.38 Atu0182 transcriptional regulator, GntR family low > 89
Castellaniella sp019104865 MT123 0.44 ABCV34_RS13570 glutamate racemase 0.13 ABCV34_RS12825 histidine utilization repressor low > 48
Serratia liquefaciens MT49 0.34 IAI46_24445 glutamate racemase 0.20 IAI46_02110 phosphonate metabolism transcriptional regulator PhnF — —
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_00800 glutamate racemase 0.17 CSW01_17220 phosphonate utilization transcriptional regulator PhnR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2353 Glutamate racemase (EC 5.1.1.3) 0.17 GFF508 Transcriptional regulator, GntR family — —
Klebsiella michiganensis M5al 0.32 BWI76_RS00895 glutamate racemase 0.17 BWI76_RS02230 phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_04083 Glutamate racemase 0.19 OHPLBJKB_03942 putative transcriptional regulator PhnF — —
Escherichia coli ECRC62 0.32 BNILDI_05855 murI glutamate racemase 0.19 BNILDI_17175 GntR family transcriptional regulator — —
Escherichia coli ECOR27 0.32 NOLOHH_05670 murI glutamate racemase 0.19 NOLOHH_18685 GntR family transcriptional regulator — —
Escherichia fergusonii Becca 0.31 EFB2_04643 Glutamate racemase 0.19 EFB2_02423 Mannosyl-D-glycerate transport/metabolism system repressor MngR — —
Escherichia coli ECRC99 0.31 KEDOAH_14635 murI glutamate racemase 0.19 KEDOAH_15520 phnF phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli ECRC100 0.31 OKFHMN_13525 murI glutamate racemase 0.19 OKFHMN_12645 phnF phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli ECRC101 0.31 MCAODC_04025 murI glutamate racemase 0.19 MCAODC_03155 phnF phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS22910 glutamate racemase 0.19 ECOLIN_RS08770 GntR family transcriptional regulator — —
Escherichia coli ECRC98 0.31 JDDGAC_17150 murI glutamate racemase 0.19 JDDGAC_16280 phnF phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli ECOR38 0.31 HEPCGN_12180 murI glutamate racemase 0.19 HEPCGN_26880 GntR family transcriptional regulator — —
Escherichia coli ECRC102 0.31 NIAGMN_11275 murI glutamate racemase 0.19 NIAGMN_10490 phnF phosphonate metabolism transcriptional regulator PhnF — —
Escherichia coli BW25113 0.31 b3967 murI glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan (VIMSS) 0.19 b4102 phnF predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation (NCBI) — —
Escherichia coli BL21 0.31 ECD_03852 glutamate racemase 0.19 ECD_03974 putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation — —
Enterobacter asburiae PDN3 0.30 EX28DRAFT_4430 glutamate racemase (EC 5.1.1.3) 0.19 EX28DRAFT_4203 phosphonates metabolism transcriptional regulator PhnF — —
Enterobacter sp. TBS_079 0.30 MPMX20_04513 Glutamate racemase 0.20 MPMX20_00322 putative transcriptional regulator PhnF — —
Shewanella amazonensis SB2B 0.29 Sama_0194 glutamate racemase (RefSeq) 0.11 Sama_0081 histidine utilization repressor (RefSeq) — —
Variovorax sp. OAS795 0.23 ABID97_RS17555 glutamate racemase 0.17 ABID97_RS27715 GntR family transcriptional regulator — —
Dechlorosoma suillum PS 0.23 Dsui_1998 glutamate racemase 0.17 Dsui_2210 transcriptional regulator — —
Variovorax sp. SCN45 0.22 GFF484 Glutamate racemase (EC 5.1.1.3) 0.25 GFF6262 Transcriptional regulator PhnF — —
Pseudomonas sp. S08-1 0.22 OH686_07895 glutamate racemase 0.17 OH686_23055 Putative alkanesulfonate metabolism utilization regulator — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_0952 glutamate racemase 0.17 Psyr_2250 transcriptional regulator, GntR family — —
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_0952 glutamate racemase 0.17 Psyr_2250 transcriptional regulator, GntR family — —
Pseudomonas putida KT2440 0.22 PP_0736 Glutamate racemase 0.17 PP_1727 Transcriptional regulator, GntR family — —
Ralstonia solanacearum PSI07 0.21 RPSI07_RS14860 glutamate racemase 0.17 RPSI07_RS06755 GntR family transcriptional regulator low > 81
Pseudomonas simiae WCS417 0.21 PS417_03620 glutamate racemase 0.15 PS417_22980 GntR family transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.21 RS_RS09835 glutamate racemase 0.17 RS_RS17570 GntR family transcriptional regulator low > 80
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS14380 glutamate racemase 0.18 ABZR87_RS17730 GntR family transcriptional regulator low > 80
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS03670 glutamate racemase 0.16 PFLU_RS08755 phosphonate metabolism transcriptional regulator PhnF — —
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_14800 glutamate racemase 0.18 AO353_28380 GntR family transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS03670 glutamate racemase 0.16 PFLU_RS08755 phosphonate metabolism transcriptional regulator PhnF — —
Pseudomonas stutzeri RCH2 0.21 Psest_1116 glutamate racemase 0.15 Psest_0097 phosphonates metabolism transcriptional regulator PhnF — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF4098 Glutamate racemase (EC 5.1.1.3) 0.15 GFF3591 Histidine utilization repressor low > 90
Acidovorax sp. GW101-3H11 0.20 Ac3H11_940 Glutamate racemase (EC 5.1.1.3) 0.30 Ac3H11_4540 Transcriptional regulator PhnF — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_4654 glutamate racemase 0.14 Echvi_0410 Transcriptional regulators low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.12 A4249_RS12530 aspartate/glutamate racemase family protein 0.12 A4249_RS06610 histidine utilization repressor — —
Azospirillum sp. SherDot2 0.11 MPMX19_01787 Glutamate racemase 0.21 MPMX19_03609 HTH-type transcriptional repressor NagR — —

Not shown: 21 genomes with orthologs for TX73_008175 only; 22 genomes with orthologs for TX73_003600 only