| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc02414 | | hydrolase | 1.0 | SMc01099 | | tRNA pseudouridine synthase A | 0.46 | 17 |
| Agrobacterium fabrum C58 | 0.82 | Atu4694 | | chlorohydrolase | 0.78 | Atu0368 | | tRNA pseudouridine synthase I | low | > 89 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS11820 | | amidohydrolase | 0.34 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | low | > 109 |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS18020 | | amidohydrolase family protein | 0.52 | ABIE41_RS00165 | | tRNA pseudouridine(38-40) synthase TruA | low | > 77 |
| Azospirillum sp. SherDot2 | 0.15 | MPMX19_04687 | | Atrazine chlorohydrolase | 0.58 | MPMX19_02005 | | tRNA pseudouridine synthase A | — | — |
| Azospirillum brasilense Sp245 | 0.14 | AZOBR_RS22765 | | hydrolase | 0.57 | AZOBR_RS03570 | | tRNA pseudouridine synthase A | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.13 | DvMF_0548 | | Guanine deaminase (RefSeq) | 0.21 | DvMF_1395 | truA | tRNA pseudouridine synthase A (RefSeq) | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.13 | GFF2990 | | chlorohydrolase family protein | 0.30 | GFF3357 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
| Marinobacter adhaerens HP15 | 0.13 | HP15_1228 | | chlorohydrolase/deaminase family protein | 0.35 | HP15_1829 | | tRNA pseudouridine synthase A | low | > 73 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.12 | DVU1825 | | amidohydrolase family protein (TIGR) | 0.25 | DVU0911 | truA | tRNA pseudouridine synthase A (TIGR) | low | > 55 |
| Serratia liquefaciens MT49 | 0.11 | IAI46_21760 | | amidohydrolase family protein | 0.33 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | low | > 86 |
| Paraburkholderia graminis OAS925 | 0.11 | ABIE53_002386 | | 8-oxoguanine deaminase | 0.34 | ABIE53_004807 | | tRNA pseudouridine38-40 synthase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.11 | RR42_RS07300 | | hydroxydechloroatrazine ethylaminohydrolase | 0.29 | RR42_RS14370 | | tRNA pseudouridine synthase A | — | — |
| Herbaspirillum seropedicae SmR1 | 0.11 | HSERO_RS16310 | | hydroxydechloroatrazine ethylaminohydrolase | 0.34 | HSERO_RS16485 | | tRNA pseudouridine synthase A | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.11 | QEN71_RS07050 | | 8-oxoguanine deaminase | 0.35 | QEN71_RS17635 | | tRNA pseudouridine(38-40) synthase TruA | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.11 | H281DRAFT_05164 | | Cytosine/adenosine deaminase | 0.34 | H281DRAFT_06069 | | tRNA pseudouridine38-40 synthase | low | > 103 |
| Klebsiella michiganensis M5al | 0.10 | BWI76_RS21750 | | amidohydrolase family protein | 0.33 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | low | > 92 |
| Pantoea sp. MT58 | 0.10 | IAI47_21085 | | amidohydrolase family protein | 0.31 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | low | > 76 |
| Pseudomonas sp. RS175 | 0.10 | PFR28_00902 | | 5-methylthioadenosine/S-adenosylhomocysteine deaminase | 0.33 | PFR28_02817 | | tRNA pseudouridine synthase A | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.10 | Psyr_3649 | | Amidohydrolase | 0.33 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.10 | Psyr_3649 | | Amidohydrolase | 0.33 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.09 | MPMX20_02158 | | 5-methylthioadenosine/S-adenosylhomocysteine deaminase | 0.34 | MPMX20_03253 | | tRNA pseudouridine synthase A | low | > 85 |
| Pseudomonas stutzeri RCH2 | 0.09 | Psest_2003 | | Cytosine deaminase and related metal-dependent hydrolases | 0.32 | Psest_2585 | | pseudouridylate synthase I | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.09 | Pf1N1B4_355 | | S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase | 0.34 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.09 | PfGW456L13_2172 | | S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase | 0.34 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.40 | 42 |