Conservation of cofitness between Psyr_3165 and Psyr_4843 in Pseudomonas syringae pv. syringae B728a

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3165 transcriptional regulator, LysR family 1.0 Psyr_4843 NUDIX hydrolase 0.37 8
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3165 transcriptional regulator, LysR family 1.00 Psyr_4843 NUDIX hydrolase low > 86
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS07335 LysR family transcriptional regulator 0.98 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas fluorescens SBW25 0.76 PFLU_RS07335 LysR family transcriptional regulator 0.98 PFLU_RS28650 RNA pyrophosphohydrolase low > 109
Pseudomonas simiae WCS417 0.76 PS417_07220 LysR family transcriptional regulator 0.98 PS417_26990 RNA pyrophosphohydrolase low > 88
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_26720 LysR family transcriptional regulator 0.98 AO353_08470 RNA pyrophosphohydrolase low > 101
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0581 Transcriptional regulator 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes — —
Pantoea sp. MT58 0.55 IAI47_10140 LysR family transcriptional regulator 0.69 IAI47_03915 RNA pyrophosphohydrolase low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_02971 HTH-type transcriptional regulator CynR 0.60 MPMX20_03693 RNA pyrophosphohydrolase — —
Pseudomonas putida KT2440 0.49 PP_2054 putative DNA-binding transcriptional regulator 0.98 PP_5146 RNA pyrophosphohydrolase low > 96
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_4462 LysR family transcriptional regulator YbhD 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_28895 LysR family transcriptional regulator 0.98 AO356_10345 RNA pyrophosphohydrolase low > 104
Pseudomonas sp. RS175 0.47 PFR28_01942 HTH-type transcriptional regulator CynR 0.98 PFR28_04831 RNA pyrophosphohydrolase low > 88
Azospirillum brasilense Sp245 0.46 AZOBR_RS28100 LysR family transcriptional regulator 0.31 AZOBR_RS04025 RNA pyrophosphohydrolase low > 97
Azospirillum sp. SherDot2 0.46 MPMX19_03557 HTH-type transcriptional regulator CynR 0.33 MPMX19_01945 RNA pyrophosphohydrolase low > 112
Agrobacterium fabrum C58 0.45 Atu4264 LysR family transcriptional regulator 0.26 Atu2772 Invasion protein A low > 89
Dickeya dadantii 3937 0.44 DDA3937_RS07805 LysR family transcriptional regulator 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase low > 74
Escherichia coli ECOR27 0.41 NOLOHH_23100 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 NOLOHH_11885 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC99 0.41 KEDOAH_21295 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 KEDOAH_08130 rppH RNA pyrophosphohydrolase — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS04090 LysR family transcriptional regulator 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase — —
Escherichia coli ECRC102 0.41 NIAGMN_04720 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 NIAGMN_17770 rppH RNA pyrophosphohydrolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_02945 Hydrogen peroxide-inducible genes activator 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase — —
Escherichia coli ECRC101 0.41 MCAODC_25890 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 MCAODC_10525 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECRC62 0.41 BNILDI_21095 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 BNILDI_10365 rppH RNA pyrophosphohydrolase low > 75
Escherichia fergusonii Becca 0.41 EFB2_03338 Hydrogen peroxide-inducible genes activator 0.70 EFB2_01054 RNA pyrophosphohydrolase — —
Escherichia coli ECRC98 0.41 JDDGAC_10325 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 JDDGAC_23665 rppH RNA pyrophosphohydrolase — —
Escherichia coli ECOR38 0.41 HEPCGN_01605 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 HEPCGN_19255 rppH RNA pyrophosphohydrolase low > 87
Escherichia coli BW25113 0.41 b0768 ybhD predicted DNA-binding transcriptional regulator (RefSeq) 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) low > 76
Escherichia coli ECRC100 0.41 OKFHMN_06670 ybhD Uncharacterized HTH-type transcriptional regulator YbhD 0.70 OKFHMN_20000 rppH RNA pyrophosphohydrolase — —
Klebsiella michiganensis M5al 0.40 BWI76_RS04365 LysR family transcriptional regulator 0.69 BWI76_RS23275 RNA pyrophosphohydrolase — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS07340 LysR family transcriptional regulator 0.51 HSERO_RS01825 RNA pyrophosphohydrolase low > 78
Bosea sp. OAE506 0.32 ABIE41_RS16550 LysR family transcriptional regulator 0.30 ABIE41_RS07545 RNA pyrophosphohydrolase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS17035 LysR family transcriptional regulator 0.64 ABZR86_RS13805 RNA pyrophosphohydrolase low > 74
Rahnella sp. WP5 0.30 EX31_RS20145 LysR family transcriptional regulator 0.68 EX31_RS13205 RNA pyrophosphohydrolase — —
Sinorhizobium meliloti 1021 0.28 SM_b20123 transcriptional regulator 0.26 SMc03785 dinucleoside polyphosphate hydrolase low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF2038 LysR family transcriptional regulator YfeR 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 low > 78
Serratia liquefaciens MT49 0.28 IAI46_18415 LysR family transcriptional regulator 0.69 IAI46_20455 RNA pyrophosphohydrolase low > 86
Dickeya dianthicola 67-19 0.25 HGI48_RS00115 LysR family transcriptional regulator 0.70 HGI48_RS04955 RNA pyrophosphohydrolase — —
Escherichia coli BL21 0.24 ECD_02308 transcriptional regulator of yefH 0.70 ECD_02678 RNA pyrophosphohydrolase — —
Castellaniella sp019104865 MT123 0.22 ABCV34_RS13660 LysR family transcriptional regulator 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase low > 48
Phaeobacter inhibens DSM 17395 0.18 PGA1_262p01470 transcriptional regulator, LysR family 0.35 PGA1_c29090 RNA pyrophosphohydrolase RppH — —

Not shown: 15 genomes with orthologs for Psyr_3165 only; 26 genomes with orthologs for Psyr_4843 only