Conservation of cofitness between Psyr_4404 and Psyr_3299 in Pseudomonas syringae pv. syringae B728a

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.0 Psyr_3299 two component transcriptional regulator, LuxR family 0.39 16
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.00 Psyr_3299 two component transcriptional regulator, LuxR family low > 86
Pseudomonas simiae WCS417 0.87 PS417_02950 tRNA-dihydrouridine synthase B 0.67 PS417_19630 LuxR family transcriptional regulator 0.27 60
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.67 PFLU_RS21600 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.67 PFLU_RS21600 response regulator transcription factor low > 109
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_13660 tRNA-dihydrouridine synthase B 0.70 AO353_19270 LuxR family transcriptional regulator low > 101
Pseudomonas sp. DMC3 0.85 GFF3310 tRNA-dihydrouridine synthase B 0.70 GFF4570 Transcriptional regulatory protein DegU low > 89
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.64 Pf1N1B4_232 DNA-binding response regulator, LuxR family low > 87
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_00822 tRNA-dihydrouridine synthase B 0.68 GEMAOFIL_04126 Transcriptional regulatory protein DegU low > 93
Pseudomonas sp. RS175 0.84 PFR28_05216 tRNA-dihydrouridine synthase B 0.71 PFR28_01009 Transcriptional regulatory protein DegU low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.68 PfGW456L13_2277 DNA-binding response regulator, LuxR family low > 87
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.70 Pf6N2E2_2418 DNA-binding response regulator, LuxR family low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_08215 tRNA-dihydrouridine synthase B 0.69 AO356_02965 LuxR family transcriptional regulator low > 104
Pseudomonas sp. SVBP6 0.83 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB 0.70 COO64_RS05130 response regulator transcription factor low > 93
Pseudomonas sp. BP01 0.81 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB 0.68 JOY50_RS24990 response regulator transcription factor low > 84
Pseudomonas sp. S08-1 0.81 OH686_07610 tRNA-dihydrouridine synthase DusB 0.53 OH686_21830 Two-component transcriptional response regulator, NarL/FixJ family low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_1016 putative TIM-barrel protein, nifR3 family 0.50 Psest_0662 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain low > 67
Pseudomonas putida KT2440 0.81 PP_4820 tRNA-dihydrouridine synthase B 0.70 PP_2126 DNA-binding response regulator, LuxR family low > 96
Dechlorosoma suillum PS 0.62 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.35 Dsui_1862 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain low > 51
Ralstonia solanacearum PSI07 0.61 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.29 RPSI07_RS23850 DNA-binding response regulator low > 81
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.41 HSERO_RS12850 LuxR family transcriptional regulator low > 78
Ralstonia solanacearum UW163 0.60 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.29 UW163_RS04080 DNA-binding response regulator — —
Lysobacter sp. OAE881 0.59 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.29 ABIE51_RS16750 response regulator transcription factor low > 62
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS02730 tRNA-dihydrouridine synthase B 0.31 RR42_RS10190 LuxR family transcriptional regulator low > 128
Shewanella amazonensis SB2B 0.56 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.38 Sama_1873 response regulator receiver protein (RefSeq) low > 62
Variovorax sp. OAS795 0.56 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.32 ABID97_RS22515 response regulator transcription factor low > 91
Variovorax sp. SCN45 0.55 GFF2144 tRNA-dihydrouridine synthase DusB 0.29 GFF5818 Two-component transcriptional response regulator, NarL/FixJ family low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.27 GFF3272 DNA-binding response regulator, LuxR family low > 90
Magnetospirillum magneticum AMB-1 0.48 AMB_RS11940 tRNA dihydrouridine synthase DusB 0.33 AMB_RS06830 DNA-binding response regulator low > 64
Agrobacterium fabrum C58 0.37 Atu1444 nitrogen regulation protein 0.25 Atu5267 two component response regulator — —
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14770 tRNA-dihydrouridine synthase DusB 0.29 PGA1_c20200 two-component signal transduction system, response regulator low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.25 CA265_RS21030 hypothetical protein low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.30 ABZR88_RS19490 response regulator transcription factor low > 71
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.16 ABI39_RS02195 response regulator transcription factor low > 72
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.14 HMPREF1058_RS02885 response regulator transcription factor low > 67

Not shown: 77 genomes with orthologs for Psyr_4404 only; 3 genomes with orthologs for Psyr_3299 only