Conservation of cofitness between Psyr_3403 and Psyr_0690 in Pseudomonas syringae pv. syringae B728a

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3403 conserved hypothetical protein 1.0 Psyr_0690 3-hydroxyisobutyrate dehydrogenase 0.36 13
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3403 conserved hypothetical protein 1.00 Psyr_0690 3-hydroxyisobutyrate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_02380 23S rRNA methyltransferase 0.76 AO356_07865 3-hydroxyisobutyrate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.75 Pf6N2E2_3451 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) low > 103
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.78 PFLU_RS25535 3-hydroxyisobutyrate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.78 PFLU_RS25535 3-hydroxyisobutyrate dehydrogenase low > 109
Pseudomonas lactucae CFBP13502 0.88 GEMAOFIL_01636 Ribosomal RNA large subunit methyltransferase M 0.78 GEMAOFIL_04894 3-hydroxyisobutyrate dehydrogenase — —
Pseudomonas simiae WCS417 0.88 PS417_07520 23S rRNA methyltransferase 0.75 PS417_23720 3-hydroxyisobutyrate dehydrogenase — —
Pseudomonas sp. RS175 0.88 PFR28_01100 Ribosomal RNA large subunit methyltransferase M 0.75 PFR28_00014 3-hydroxyisobutyrate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.76 Pf1N1B4_1228 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) — —
Pseudomonas sp. SVBP6 0.86 COO64_RS05200 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.79 COO64_RS02715 mmsB 3-hydroxyisobutyrate dehydrogenase low > 93
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_00560 23S rRNA methyltransferase 0.76 AO353_05985 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) low > 101
Pseudomonas sp. DMC3 0.85 GFF1261 Ribosomal RNA large subunit methyltransferase M 0.75 GFF4926 3-hydroxyisobutyrate dehydrogenase low > 89
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.76 PfGW456L13_5145 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) low > 87
Pseudomonas putida KT2440 0.83 PP_2113 Ribosomal RNA large subunit methyltransferase M 0.81 PP_4666 3-hydroxyisobutyrate dehydrogenase low > 96
Pseudomonas sp. BP01 0.82 JOY50_RS22010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.80 JOY50_RS27600 mmsB 3-hydroxyisobutyrate dehydrogenase low > 84
Pseudomonas segetis P6 0.82 MPMX49_02323 Ribosomal RNA large subunit methyltransferase M 0.49 MPMX49_01379 NAD-dependent L-serine dehydrogenase low > 75
Pseudomonas sp. S08-1 0.82 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase 0.46 OH686_05885 3-hydroxyisobutyrate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_2520 Predicted SAM-dependent methyltransferase 0.60 Psest_2438 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) low > 67
Pseudomonas aeruginosa PA14 0.76 IKLFDK_07475 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.48 IKLFDK_18220 3-hydroxyisobutyrate dehydrogenase low > 100
Pantoea agglomerans CFBP13505 P0401 0.48 PagCFBP13505_RS16935 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.29 PagCFBP13505_RS16870 2-hydroxy-3-oxopropionate reductase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 0.28 GFF2237 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) low > 78
Escherichia coli ECRC101 0.47 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 MCAODC_04525 yihU sulfolactaldehyde 3-reductase low > 88
Escherichia coli BW25113 0.47 b2806 ygdE predicted methyltransferase (NCBI) 0.27 b3882 yihU predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI) low > 76
Escherichia coli ECOR27 0.47 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 NOLOHH_06160 yihU sulfolactaldehyde 3-reductase low > 76
Escherichia coli ECRC98 0.47 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 JDDGAC_17650 yihU sulfolactaldehyde 3-reductase low > 87
Escherichia coli ECRC99 0.47 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 KEDOAH_14130 yihU sulfolactaldehyde 3-reductase — —
Escherichia coli ECOR38 0.47 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 HEPCGN_12660 yihU sulfolactaldehyde 3-reductase low > 88
Escherichia coli ECRC100 0.47 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 OKFHMN_14025 yihU sulfolactaldehyde 3-reductase low > 79
Escherichia coli BL21 0.47 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.27 ECD_03767 3-sulfolactaldehyde (SLA) reductase, NADH-dependent; gamma-hydroxybutyrate dehydrogenase, NADH-dependent low > 61
Escherichia coli ECRC102 0.47 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 NIAGMN_11780 yihU sulfolactaldehyde 3-reductase low > 80
Escherichia coli ECRC62 0.47 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.27 BNILDI_05370 yihU sulfolactaldehyde 3-reductase low > 75
Shewanella sp. ANA-3 0.46 Shewana3_2891 putative RNA 2'-O-ribose methyltransferase (RefSeq) 0.43 Shewana3_2766 3-hydroxyisobutyrate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.45 SO1536 conserved hypothetical protein (NCBI ptt file) 0.48 SO1682 mmsB 3-hydroxyisobutyrate dehydrogenase (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.45 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.28 DZA65_RS18165 2-hydroxy-3-oxopropionate reductase low > 75
Erwinia tracheiphila SCR3 0.45 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.28 LU632_RS06330 garR 2-hydroxy-3-oxopropionate reductase low > 74
Dickeya dadantii 3937 0.45 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.28 DDA3937_RS17035 2-hydroxy-3-oxopropionate reductase low > 74
Shewanella loihica PV-4 0.45 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) 0.43 Shew_1672 3-hydroxyisobutyrate dehydrogenase (RefSeq) low > 60
Dickeya dianthicola 67-19 0.45 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.28 HGI48_RS17090 2-hydroxy-3-oxopropionate reductase low > 71
Erwinia tracheiphila HP pepo 2.2 0.45 IJEDHG_17285 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.28 IJEDHG_17355 garR 2-hydroxy-3-oxopropionate reductase low > 61
Shewanella amazonensis SB2B 0.43 Sama_2426 putative RNA 2'-O-ribose methyltransferase (RefSeq) 0.43 Sama_1380 3-hydroxyisobutyrate dehydrogenase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.39 HP15_2104 putative RNA 2'-O-ribose methyltransferase 0.50 HP15_910 3-hydroxyisobutyrate dehydrogenase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.47 Xcc-8004.3685.1 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) low > 74
Alteromonas macleodii MIT1002 0.33 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M 0.35 MIT1002_03327 3-hydroxyisobutyrate dehydrogenase low > 70

Not shown: 14 genomes with orthologs for Psyr_3403 only; 45 genomes with orthologs for Psyr_0690 only