| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_2785 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 1.0 | Pf6N2E2_5599 | | Electron transport complex protein RnfA | 0.29 | 16 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_04690 | | 16S rRNA pseudouridine(516) synthase | 0.86 | AO356_18370 | | NADH:quinone oxidoreductase | low | > 104 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_00665 | | Ribosomal small subunit pseudouridine synthase A | 0.76 | PFR28_03344 | | Ion-translocating oxidoreductase complex subunit A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_3297 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.65 | Pf1N1B4_734 | | Electron transport complex protein RnfA | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_17535 | | 16S rRNA pseudouridine(516) synthase | 0.62 | AO353_04060 | | NADH:quinone oxidoreductase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.82 | PfGW456L13_4535 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.65 | PfGW456L13_1758 | | Electron transport complex protein RnfA | low | > 87 |
| Pseudomonas putida KT2440 | 0.70 | PP_1409 | | ribosomal small subunit pseudouridine synthase A | 0.20 | PP_1096 | | putative electron transport complex protein | low | > 96 |
| Pseudomonas sp. S08-1 | 0.67 | OH686_05950 | | SSU rRNA pseudouridine(516) synthase | 0.29 | OH686_03885 | | hypothetical protein | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_3049 | | pseudouridine synthase | 0.27 | Psest_3112 | | electron transport complex, RnfABCDGE type, A subunit | low | > 67 |
| Shewanella loihica PV-4 | 0.49 | Shew_0916 | | pseudouridine synthase (RefSeq) | 0.28 | Shew_2066 | | Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) | — | — |
| Marinobacter adhaerens HP15 | 0.47 | HP15_2675 | | pseudouridine synthase, Rsu | 0.29 | HP15_1291 | | electron transport complex, RnfA | low | > 73 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_3175 | | pseudouridine synthase, Rsu (RefSeq) | 0.30 | Shewana3_2168 | | Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.45 | Sama_2785 | | pseudouridine synthase, Rsu (RefSeq) | 0.31 | Sama_1830 | | Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS17595 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.27 | LU632_RS11335 | rsxA | electron transport complex subunit RsxA | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS19195 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.27 | EX31_RS06620 | | electron transport complex subunit RsxA | low | > 89 |
| Pantoea sp. MT58 | 0.42 | IAI47_06585 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.27 | IAI47_10445 | | electron transport complex subunit RsxA | — | — |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS09200 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.26 | HGI48_RS10575 | | electron transport complex subunit RsxA | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS12950 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | HER17_RS10830 | | electron transport complex subunit RsxA | low | > 75 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS09500 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.26 | DZA65_RS11055 | | electron transport complex subunit RsxA | low | > 75 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_03149 | | Ribosomal small subunit pseudouridine synthase A | 0.29 | MPMX20_02011 | | Ion-translocating oxidoreductase complex subunit A | low | > 85 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS09160 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.26 | DDA3937_RS10575 | | electron transport complex subunit RsxA | low | > 74 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_0378 | | pseudouridine synthase | 0.28 | EX28DRAFT_1623 | | electron transport complex, RnfABCDGE type, A subunit | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF3753 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | 0.28 | GFF1815 | | Electron transport complex protein RnfA | low | > 78 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_27320 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | JDDGAC_02145 | rsxA | electron transport complex subunit RsxA | low | > 86 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_23360 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | OKFHMN_27555 | rsxA | electron transport complex subunit RsxA | 0.66 | 22 |
| Escherichia coli BL21 | 0.40 | ECD_02113 | | 16S rRNA pseudouridine(516) synthase | 0.28 | ECD_01597 | | SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex | — | — |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_04825 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | KEDOAH_00550 | rsxA | electron transport complex subunit RsxA | — | — |
| Escherichia coli BW25113 | 0.40 | b2183 | rsuA | 16S rRNA pseudouridylate 516 synthase (NCBI) | 0.28 | b1627 | rsxA | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_01526 | | Ribosomal small subunit pseudouridine synthase A | 0.28 | OHPLBJKB_02099 | | Electron transport complex subunit RsxA | low | > 73 |
| Serratia liquefaciens MT49 | 0.40 | IAI46_17345 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | IAI46_11490 | | electron transport complex subunit RsxA | low | > 86 |
| Escherichia fergusonii Becca | 0.40 | EFB2_01673 | | Ribosomal small subunit pseudouridine synthase A | 0.28 | EFB2_02365 | | Ion-translocating oxidoreductase complex subunit A | low | > 86 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_14935 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | NOLOHH_18075 | rsxA | electron transport complex subunit RsxA | — | — |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS12760 | | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | ECOLIN_RS09080 | | electron transport complex subunit RsxA | — | — |
| Escherichia coli ECRC62 | 0.40 | BNILDI_13855 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | BNILDI_16865 | rsxA | electron transport complex subunit RsxA | — | — |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_21125 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | NIAGMN_00510 | rsxA | electron transport complex subunit RsxA | — | — |
| Escherichia coli ECRC101 | 0.40 | MCAODC_14410 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | MCAODC_17855 | rsxA | electron transport complex subunit RsxA | low | > 87 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_22625 | rsuA | 16S rRNA pseudouridine(516) synthase RsuA | 0.28 | HEPCGN_05940 | rsxA | electron transport complex subunit RsxA | low | > 87 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS19810 | | 16S rRNA pseudouridine(516) synthase | 0.28 | BWI76_RS16355 | | electron transport complex subunit A | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_08220 | | 16S rRNA pseudouridine(516) synthase | 0.30 | CSW01_05175 | | electron transport complex subunit A | — | — |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS12445 | | rRNA pseudouridine synthase | 0.23 | AMB_RS13150 | | electron transport complex subunit RsxA | low | > 64 |
| Fusobacterium nucleatum SB010 | 0.26 | HUW76_04445 | | rRNA pseudouridine synthase | 0.18 | HUW76_09715 | | electron transport complex subunit RsxA | low | > 35 |
| Dechlorosoma suillum PS | 0.24 | Dsui_0824 | | pseudouridine synthase family protein | 0.26 | Dsui_2979 | | electron transport complex, RnfABCDGE type, A subunit | low | > 51 |
Not shown: 28 genomes with orthologs for Pf6N2E2_2785 only; 11 genomes with orthologs for Pf6N2E2_5599 only