Conservation of cofitness between Pf1N1B4_3491 and Pf1N1B4_6039 in Pseudomonas fluorescens FW300-N1B4

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 1.0 Pf1N1B4_6039 Endonuclease I precursor (EC 3.1.21.1) 0.26 9
Pseudomonas fluorescens FW300-N2E3 0.99 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.89 AO353_20795 deoxyribonuclease low > 101
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.93 PfGW456L13_3916 Endonuclease I precursor (EC 3.1.21.1) low > 87
Pseudomonas simiae WCS417 0.97 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.88 PS417_18420 deoxyribonuclease low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_3705 conserved hypothetical protein 0.85 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_3705 conserved hypothetical protein 0.85 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas fluorescens SBW25 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.89 PFLU_RS20395 deoxyribonuclease low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.89 PFLU_RS20395 deoxyribonuclease low > 109
Pseudomonas sp. RS175 0.96 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.92 PFR28_02739 Extracellular deoxyribonuclease low > 88
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.93 Pf6N2E2_158 Endonuclease I precursor (EC 3.1.21.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.92 AO356_00985 deoxyribonuclease 0.28 21
Pseudomonas putida KT2440 0.92 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.83 PP_2451 extracellular DNA endonuclease low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.62 Psest_1274 Endonuclease I low > 67
Pseudomonas sp. S08-1 0.88 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.68 OH686_20125 Endonuclease I precursor low > 80
Shewanella amazonensis SB2B 0.72 Sama_1801 hypothetical protein (RefSeq) 0.47 Sama_0576 deoxyribonuclease I (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2354 conserved hypothetical protein (NCBI ptt file) 0.44 SO0833 endA endonuclease I (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.49 CSW01_02500 deoxyribonuclease low > 62
Escherichia coli ECRC101 0.70 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.44 MCAODC_09805 endA deoxyribonuclease I low > 87
Escherichia coli ECRC100 0.70 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.44 OKFHMN_19285 endA deoxyribonuclease I — —
Escherichia coli ECRC98 0.70 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.44 JDDGAC_22915 endA deoxyribonuclease I low > 86
Escherichia coli ECRC102 0.70 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.44 NIAGMN_17050 endA deoxyribonuclease I — —
Escherichia coli ECOR27 0.70 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.45 NOLOHH_11155 endA deoxyribonuclease I low > 75
Escherichia coli BL21 0.70 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.45 ECD_02775 DNA-specific endonuclease I low > 61
Escherichia coli ECRC62 0.70 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.45 BNILDI_09735 endA deoxyribonuclease I low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.45 OHPLBJKB_00773 Endonuclease-1 low > 73
Escherichia coli ECRC99 0.70 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.44 KEDOAH_08855 endA deoxyribonuclease I — —
Escherichia coli ECOR38 0.70 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.45 HEPCGN_18590 endA deoxyribonuclease I low > 87
Dickeya dadantii 3937 0.70 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 DDA3937_RS18550 deoxyribonuclease I low > 74
Dickeya dianthicola ME23 0.70 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 DZA65_RS19620 deoxyribonuclease I low > 75
Escherichia coli Nissle 1917 0.70 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.45 ECOLIN_RS16385 deoxyribonuclease I — —
Dickeya dianthicola 67-19 0.70 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.45 HGI48_RS18485 deoxyribonuclease I low > 71
Escherichia coli BW25113 0.70 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.45 b2945 endA DNA-specific endonuclease I (NCBI) low > 76
Pantoea sp. MT58 0.70 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.45 IAI47_03625 deoxyribonuclease I low > 76
Escherichia fergusonii Becca 0.70 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.45 EFB2_00957 Endonuclease-1 low > 86
Klebsiella michiganensis M5al 0.69 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 BWI76_RS24065 deoxyribonuclease I low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.45 GFF3047 Endonuclease I precursor (EC 3.1.21.1) @ Extracellular deoxyribonuclease Dns (EC 3.1.21.-) low > 78
Enterobacter sp. TBS_079 0.69 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.46 MPMX20_03803 Endonuclease-1 low > 85
Pectobacterium carotovorum WPP14 0.69 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.44 HER17_RS02645 deoxyribonuclease I low > 75
Enterobacter asburiae PDN3 0.69 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.46 EX28DRAFT_2983 Endonuclease I low > 76
Serratia liquefaciens MT49 0.69 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 IAI46_21380 deoxyribonuclease I low > 86
Shewanella loihica PV-4 0.69 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.48 Shew_3223 deoxyribonuclease I (RefSeq) low > 60
Rahnella sp. WP5 0.68 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA 0.44 EX31_RS02655 deoxyribonuclease I low > 89

Not shown: 40 genomes with orthologs for Pf1N1B4_3491 only; 1 genomes with orthologs for Pf1N1B4_6039 only