Conservation of cofitness between Pf1N1B4_2147 and Pf1N1B4_3906 in Pseudomonas fluorescens FW300-N1B4

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2147 Putrescine utilization regulator 1.0 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) 0.35 8
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29365 cupin domain-containing protein 0.96 PFLU_RS07665 type I DNA topoisomerase 0.49 106
Pseudomonas simiae WCS417 0.99 PS417_27690 XRE family transcriptional regulator 0.95 PS417_07590 DNA topoisomerase I — —
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29365 cupin domain-containing protein 0.96 PFLU_RS07665 type I DNA topoisomerase 0.16 57
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_09140 XRE family transcriptional regulator 0.95 AO353_00495 DNA topoisomerase I 0.28 23
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_12635 XRE family transcriptional regulator 0.96 AO356_02315 DNA topoisomerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_4394 Putrescine utilization regulator 0.96 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) — —
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_815 Putrescine utilization regulator 0.97 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) low > 87
Pseudomonas sp. RS175 0.97 PFR28_04396 HTH-type transcriptional regulator PuuR 0.97 PFR28_01113 DNA topoisomerase 1 0.40 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_0238 Helix-turn-helix motif protein 0.92 Psyr_3287 DNA topoisomerase I — —
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_0238 Helix-turn-helix motif protein 0.92 Psyr_3287 DNA topoisomerase I low > 86
Pseudomonas putida KT2440 0.89 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine 0.91 PP_2139 DNA topoisomerase I — —
Pseudomonas sp. S08-1 0.83 OH686_13700 Putrescine utilization regulator 0.87 OH686_21940 DNA topoisomerase I — —
Pseudomonas stutzeri RCH2 0.83 Psest_3791 Predicted transcriptional regulators 0.89 Psest_2651 DNA topoisomerase I, bacterial low > 67
Shewanella oneidensis MR-1 0.71 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.68 SO2705 topA DNA topoisomerase I (NCBI ptt file) — —
Shewanella loihica PV-4 0.70 Shew_0970 XRE family transcriptional regulator (RefSeq) 0.67 Shew_2224 DNA topoisomerase I (RefSeq) — —
Shewanella amazonensis SB2B 0.70 Sama_2646 XRE family transcriptional regulator (RefSeq) 0.68 Sama_1322 DNA topoisomerase I (RefSeq) — —
Shewanella sp. ANA-3 0.70 Shewana3_3100 XRE family transcriptional regulator (RefSeq) 0.68 Shewana3_1729 DNA topoisomerase I (RefSeq) — —
Pantoea sp. MT58 0.41 IAI47_07115 HTH-type transcriptional regulator PuuR 0.67 IAI47_09235 type I DNA topoisomerase low > 76
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1500 Predicted transcriptional regulators 0.66 EX28DRAFT_0945 DNA topoisomerase I, bacterial — —
Escherichia coli BL21 0.37 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.68 ECD_01250 DNA topoisomerase I, omega subunit 0.69 31
Escherichia coli ECRC98 0.37 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.68 JDDGAC_05150 type I DNA topoisomerase — —
Escherichia coli ECRC101 0.37 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.68 MCAODC_15660 type I DNA topoisomerase — —
Escherichia coli ECRC99 0.37 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.68 KEDOAH_26160 type I DNA topoisomerase — —
Serratia liquefaciens MT49 0.37 IAI46_17165 HTH-type transcriptional regulator PuuR 0.66 IAI46_13970 type I DNA topoisomerase low > 86
Escherichia coli ECOR27 0.37 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.68 NOLOHH_20270 type I DNA topoisomerase — —
Escherichia coli ECRC102 0.37 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.68 NIAGMN_26775 type I DNA topoisomerase — —
Rahnella sp. WP5 0.37 EX31_RS17905 HTH-type transcriptional regulator PuuR 0.66 EX31_RS09895 type I DNA topoisomerase low > 89
Escherichia coli ECOR38 0.37 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.68 HEPCGN_25595 type I DNA topoisomerase low > 87
Escherichia coli ECRC100 0.37 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.68 OKFHMN_02605 type I DNA topoisomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.68 OHPLBJKB_02410 DNA topoisomerase 1 low > 73
Escherichia coli ECRC62 0.37 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.68 BNILDI_18420 type I DNA topoisomerase low > 75
Escherichia coli BW25113 0.37 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.68 b1274 topA DNA topoisomerase I (NCBI) — —
Klebsiella michiganensis M5al 0.37 BWI76_RS10700 XRE family transcriptional regulator 0.66 BWI76_RS11925 DNA topoisomerase I — —
Fusobacterium nucleatum SB010 0.22 HUW76_07320 helix-turn-helix domain-containing protein 0.24 HUW76_06805 type I DNA topoisomerase — —
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU3066 DNA-binding protein (TIGR) 0.29 DVU3389 topA DNA topoisomerase I (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2356 transcriptional regulator, XRE family (RefSeq) 0.29 DvMF_2069 DNA topoisomerase I (RefSeq) — —

Not shown: 20 genomes with orthologs for Pf1N1B4_2147 only; 16 genomes with orthologs for Pf1N1B4_3906 only