Conservation of cofitness between Pf1N1B4_3500 and Pf1N1B4_3501 in Pseudomonas fluorescens FW300-N1B4

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3500 D-lactate dehydrogenase (EC 1.1.1.28) 1.0 Pf1N1B4_3501 BarA sensory histidine kinase (= VarS = GacS) 0.25 13
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_02740 hydroxyacid dehydrogenase 0.91 AO353_02735 chemotaxis protein CheY low > 101
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) 0.92 PfGW456L13_2029 BarA sensory histidine kinase (= VarS = GacS) low > 87
Pseudomonas simiae WCS417 0.88 PS417_16375 2-hydroxyacid dehydrogenase 0.85 PS417_16370 chemotaxis protein CheY low > 88
Pseudomonas fluorescens SBW25 0.87 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.85 PFLU_RS18410 response regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.85 PFLU_RS18410 response regulator low > 109
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_19040 hydroxyacid dehydrogenase 0.91 AO356_19045 chemotaxis protein CheY low > 104
Pseudomonas sp. RS175 0.86 PFR28_03228 D-lactate dehydrogenase 0.89 PFR28_03227 Signal transduction histidine-protein kinase BarA low > 88
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) 0.91 Pf6N2E2_5720 BarA sensory histidine kinase (= VarS = GacS) low > 103
Pseudomonas putida KT2440 0.82 PP_1649 D-lactate dehydrogenase 0.68 PP_1650 Sensor protein GacS low > 96
Pseudomonas stutzeri RCH2 0.74 Psest_4064 Lactate dehydrogenase and related dehydrogenases 0.68 Psest_1635 Signal transduction histidine kinase low > 67
Pseudomonas sp. S08-1 0.70 OH686_18940 D-lactate dehydrogenase 0.71 OH686_18945 Signal transduction histidine-protein kinase BarA low > 80
Shewanella sp. ANA-3 0.57 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.29 Shewana3_1109 hybrid sensory histidine kinase BarA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO0968 ldhA D-lactate dehydrogenase (NCBI ptt file) 0.29 SO_3457 hybrid sensory histidine kinase BarA (RefSeq) low > 76
Shewanella amazonensis SB2B 0.54 Sama_0612 D-lactate dehydrogenase (RefSeq) 0.28 Sama_1031 hybrid sensory histidine kinase BarA (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.30 Shew_1200 hybrid sensory histidine kinase BarA (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_14945 2-hydroxyacid dehydrogenase 0.28 CSW01_12415 two-component sensor histidine kinase BarA low > 62
Escherichia coli ECOR27 0.52 NOLOHH_19530 ldhA D-lactate dehydrogenase 0.29 NOLOHH_12115 barA two-component sensor histidine kinase BarA low > 75
Pantoea sp. MT58 0.52 IAI47_09495 2-hydroxyacid dehydrogenase 0.27 IAI47_04110 two-component sensor histidine kinase BarA low > 76
Escherichia coli BW25113 0.52 b1380 ldhA D-lactate dehydrogenase (NCBI) 0.29 b2786 barA hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) low > 76
Escherichia coli ECOR38 0.52 HEPCGN_26050 ldhA D-lactate dehydrogenase 0.29 HEPCGN_19490 barA two-component sensor histidine kinase BarA low > 87
Escherichia coli ECRC102 0.52 NIAGMN_25930 ldhA D-lactate dehydrogenase 0.29 NIAGMN_18010 barA two-component sensor histidine kinase BarA — —
Escherichia coli ECRC99 0.52 KEDOAH_26640 ldhA D-lactate dehydrogenase 0.29 KEDOAH_07890 barA two-component sensor histidine kinase BarA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02331 D-lactate dehydrogenase 0.29 OHPLBJKB_00945 Signal transduction histidine-protein kinase BarA low > 73
Escherichia coli ECRC62 0.52 BNILDI_17985 ldhA D-lactate dehydrogenase 0.29 BNILDI_10620 barA two-component sensor histidine kinase BarA low > 75
Escherichia coli ECRC98 0.52 JDDGAC_04285 ldhA D-lactate dehydrogenase 0.29 JDDGAC_23905 barA two-component sensor histidine kinase BarA low > 86
Escherichia coli BL21 0.52 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.29 ECD_02631 hybrid sensory histidine kinase, in two-component regulatory system with UvrY low > 61
Escherichia fergusonii Becca 0.52 EFB2_02576 D-lactate dehydrogenase 0.29 EFB2_01131 Signal transduction histidine-protein kinase BarA low > 86
Escherichia coli ECRC101 0.52 MCAODC_16140 ldhA D-lactate dehydrogenase 0.29 MCAODC_10765 barA two-component sensor histidine kinase BarA low > 87
Escherichia coli ECRC100 0.52 OKFHMN_01795 ldhA D-lactate dehydrogenase 0.29 OKFHMN_20240 barA two-component sensor histidine kinase BarA low > 80
Escherichia coli Nissle 1917 0.52 ECOLIN_RS08110 D-lactate dehydrogenase 0.29 ECOLIN_RS15525 two-component sensor histidine kinase BarA low > 55
Serratia liquefaciens MT49 0.51 IAI46_13355 2-hydroxyacid dehydrogenase 0.28 IAI46_03590 two-component sensor histidine kinase BarA low > 86
Klebsiella michiganensis M5al 0.51 BWI76_RS12790 lactate dehydrogenase 0.27 BWI76_RS22815 hybrid sensor histidine kinase/response regulator low > 92
Enterobacter asburiae PDN3 0.51 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases 0.28 EX28DRAFT_2866 Uncharacterized domain of BarA-like signal transduction histidine kinases low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_02132 D-lactate dehydrogenase 0.28 MPMX20_03655 Signal transduction histidine-protein kinase BarA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) 0.28 GFF4839 BarA sensory histidine kinase (= VarS = GacS) low > 78
Dickeya dadantii 3937 0.50 DDA3937_RS12295 2-hydroxyacid dehydrogenase 0.29 DDA3937_RS17025 two-component sensor histidine kinase BarA low > 74
Rahnella sp. WP5 0.49 EX31_RS06470 2-hydroxyacid dehydrogenase 0.27 EX31_RS07965 two-component sensor histidine kinase BarA low > 89
Pectobacterium carotovorum WPP14 0.48 HER17_RS09630 2-hydroxyacid dehydrogenase 0.28 HER17_RS04105 two-component sensor histidine kinase BarA low > 75

Not shown: 25 genomes with orthologs for Pf1N1B4_3500 only; 7 genomes with orthologs for Pf1N1B4_3501 only