Conservation of cofitness between PP_4700 and PP_4799 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4700 pantothenate synthetase 1.0 PP_4799 putative Muramoyltetrapeptide carboxypeptidase 0.49 16
Pseudomonas sp. RS175 0.84 PFR28_03722 Pantothenate synthetase 0.57 PFR28_03860 putative murein peptide carboxypeptidase — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_16055 pantoate--beta-alanine ligase 0.61 AO356_15350 peptidase S66 — —
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_5152 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.60 Pf6N2E2_5006 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_14380 pantoate--beta-alanine ligase 0.62 AO353_06435 peptidase S66 — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1520 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.58 PfGW456L13_1368 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) low > 87
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2853 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.59 Pf1N1B4_2700 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25755 pantoate--beta-alanine ligase 0.58 PFLU_RS26615 LD-carboxypeptidase — —
Pseudomonas simiae WCS417 0.80 PS417_23915 pantoate--beta-alanine ligase 0.57 PS417_24685 peptidase S66 — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25755 pantoate--beta-alanine ligase 0.58 PFLU_RS26615 LD-carboxypeptidase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_0827 pantothenate synthetase 0.30 Psyr_1838 Peptidase U61, LD-carboxypeptidase A — —
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_0827 pantothenate synthetase 0.30 Psyr_1838 Peptidase U61, LD-carboxypeptidase A — —
Escherichia fergusonii Becca 0.53 EFB2_03911 Pantothenate synthetase 0.17 EFB2_02740 Murein tetrapeptide carboxypeptidase low > 86
Escherichia coli ECOR38 0.52 HEPCGN_08380 panC pantoate--beta-alanine ligase 0.17 HEPCGN_24800 ldcA muramoyltetrapeptide carboxypeptidase low > 85
Escherichia coli ECRC99 0.52 KEDOAH_17750 panC pantoate--beta-alanine ligase 0.16 KEDOAH_25320 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC102 0.52 NIAGMN_08255 panC pantoate--beta-alanine ligase 0.16 NIAGMN_27915 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC101 0.52 MCAODC_00920 panC pantoate--beta-alanine ligase 0.16 MCAODC_21865 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC101 0.52 OKFHMN_10405 panC pantoate--beta-alanine ligase 0.16 OKFHMN_28320 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC98 0.52 JDDGAC_14000 panC pantoate--beta-alanine ligase 0.16 JDDGAC_06190 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC62 0.52 BNILDI_08920 panC pantoate--beta-alanine ligase 0.17 BNILDI_18870 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli BL21 0.52 ECD_00132 pantothenate synthetase 0.17 ECD_01167 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03528 Pantothenate synthetase 0.17 OHPLBJKB_02496 Murein tetrapeptide carboxypeptidase — —
Escherichia coli ECOR27 0.52 NOLOHH_02750 panC pantoate--beta-alanine ligase 0.16 NOLOHH_20705 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli BW25113 0.52 b0133 panC pantoate--beta-alanine ligase (NCBI) 0.17 b1192 ldcA L,D-carboxypeptidase A (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF92 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.18 GFF2801 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) low > 78
Dickeya dadantii 3937 0.51 DDA3937_RS15960 pantoate--beta-alanine ligase 0.19 DDA3937_RS14040 LD-carboxypeptidase low > 74
Erwinia tracheiphila SCR3 0.50 LU632_RS20105 panC pantoate--beta-alanine ligase 0.16 LU632_RS14010 ldcA muramoyltetrapeptide carboxypeptidase low > 74
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_03130 pantoate--beta-alanine ligase 0.16 CSW01_16365 LD-carboxypeptidase — —
Rahnella sp. WP5 0.49 EX31_RS03285 pantoate--beta-alanine ligase 0.17 EX31_RS09000 LD-carboxypeptidase low > 89
Enterobacter asburiae PDN3 0.48 EX28DRAFT_3729 pantoate--beta-alanine ligase 0.16 EX28DRAFT_0769 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_00826 Pantothenate synthetase 0.16 MPMX20_02696 Murein tetrapeptide carboxypeptidase low > 85
Ralstonia solanacearum UW163 0.44 UW163_RS09235 pantoate--beta-alanine ligase 0.20 UW163_RS13960 muramoyltetrapeptide carboxypeptidase — —
Variovorax sp. OAS795 0.44 ABID97_RS07430 pantoate--beta-alanine ligase 0.16 ABID97_RS16320 LD-carboxypeptidase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS15520 pantoate--beta-alanine ligase 0.20 HSERO_RS11050 peptidase S66 — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS04435 pantoate--beta-alanine ligase 0.20 RALBFv3_RS00630 muramoyltetrapeptide carboxypeptidase — —
Variovorax sp. SCN45 0.43 GFF2578 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.17 GFF186 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00150 pantothenate synthetase 0.19 H281DRAFT_06199 muramoyltetrapeptide carboxypeptidase — —
Ralstonia solanacearum PSI07 0.43 RPSI07_RS12935 pantoate--beta-alanine ligase 0.20 RPSI07_RS16875 muramoyltetrapeptide carboxypeptidase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS06825 pantoate--beta-alanine ligase 0.12 A4249_RS10615 LD-carboxypeptidase — —
Paraburkholderia graminis OAS925 0.41 ABIE53_001260 pantoate--beta-alanine ligase 0.20 ABIE53_002396 muramoyltetrapeptide carboxypeptidase — —
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS04925 pantothenate synthetase 0.20 BPHYT_RS11575 peptidase S66 — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_3840 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.17 Ac3H11_555 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS06090 pantoate--beta-alanine ligase 0.21 HMPREF1181_RS00850 LD-carboxypeptidase — —
Bacteroides ovatus ATCC 8483 0.38 BACOVA_05108 pantoate--beta-alanine ligase 0.20 BACOVA_01632 LD-carboxypeptidase — —
Bacteroides thetaiotaomicron VPI-5482 0.38 BT4308 pantoate--beta-alanine ligase (NCBI ptt file) 0.22 BT2549 putative carboxypeptidase (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS18500 pantoate--beta-alanine ligase 0.22 ABZR88_RS19815 LD-carboxypeptidase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1220 Pantoate--beta-alanine ligase (EC 6.3.2.1) 0.15 GFF4699 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —

Not shown: 51 genomes with orthologs for PP_4700 only; 2 genomes with orthologs for PP_4799 only