Conservation of cofitness between PP_2000 and PP_4799 in Pseudomonas putida KT2440

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2000 amidophosphoribosyl transferase 1.0 PP_4799 putative Muramoyltetrapeptide carboxypeptidase 0.52 5
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.58 PfGW456L13_1368 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Pseudomonas sp. RS175 0.94 PFR28_02811 Amidophosphoribosyltransferase 0.57 PFR28_03860 putative murein peptide carboxypeptidase 0.45 36
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_20690 amidophosphoribosyltransferase 0.62 AO353_06435 peptidase S66 — —
Pseudomonas simiae WCS417 0.94 PS417_18535 amidophosphoribosyltransferase 0.57 PS417_24685 peptidase S66 — —
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.60 Pf6N2E2_5006 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.58 PFLU_RS26615 LD-carboxypeptidase — —
Pseudomonas fluorescens SBW25 0.94 PFLU_RS20515 amidophosphoribosyltransferase 0.58 PFLU_RS26615 LD-carboxypeptidase — —
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_21465 amidophosphoribosyltransferase 0.61 AO356_15350 peptidase S66 — —
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1668 amidophosphoribosyltransferase 0.30 Psyr_1838 Peptidase U61, LD-carboxypeptidase A — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1668 amidophosphoribosyltransferase 0.30 Psyr_1838 Peptidase U61, LD-carboxypeptidase A — —
Dickeya dadantii 3937 0.64 DDA3937_RS14435 amidophosphoribosyltransferase 0.19 DDA3937_RS14040 LD-carboxypeptidase low > 74
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05115 amidophosphoribosyltransferase 0.16 CSW01_16365 LD-carboxypeptidase — —
Escherichia coli BL21 0.63 ECD_02237 amidophosphoribosyltransferase 0.17 ECD_01167 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A low > 60
Escherichia coli ECOR27 0.63 NOLOHH_14335 purF amidophosphoribosyltransferase 0.16 NOLOHH_20705 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli BW25113 0.63 b2312 purF amidophosphoribosyltransferase (NCBI) 0.17 b1192 ldcA L,D-carboxypeptidase A (NCBI) low > 76
Escherichia coli ECRC62 0.63 BNILDI_13255 purF amidophosphoribosyltransferase 0.17 BNILDI_18870 ldcA muramoyltetrapeptide carboxypeptidase — —
Erwinia tracheiphila SCR3 0.63 LU632_RS07865 purF amidophosphoribosyltransferase 0.16 LU632_RS14010 ldcA muramoyltetrapeptide carboxypeptidase 0.68 37
Escherichia coli ECRC101 0.63 MCAODC_13755 purF amidophosphoribosyltransferase 0.16 MCAODC_21865 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECOR38 0.63 HEPCGN_21910 purF amidophosphoribosyltransferase 0.17 HEPCGN_24800 ldcA muramoyltetrapeptide carboxypeptidase low > 85
Escherichia fergusonii Becca 0.63 EFB2_01546 Amidophosphoribosyltransferase 0.17 EFB2_02740 Murein tetrapeptide carboxypeptidase low > 86
Escherichia coli ECRC99 0.63 KEDOAH_05480 purF amidophosphoribosyltransferase 0.16 KEDOAH_25320 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC98 0.63 JDDGAC_26675 purF amidophosphoribosyltransferase 0.16 JDDGAC_06190 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC101 0.63 OKFHMN_22715 purF amidophosphoribosyltransferase 0.16 OKFHMN_28320 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli ECRC102 0.63 NIAGMN_20485 purF amidophosphoribosyltransferase 0.16 NIAGMN_27915 ldcA muramoyltetrapeptide carboxypeptidase — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS13405 amidophosphoribosyltransferase 0.17 ECOLIN_RS07200 muramoyltetrapeptide carboxypeptidase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.18 GFF2801 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) low > 78
Enterobacter sp. TBS_079 0.63 MPMX20_03247 Amidophosphoribosyltransferase 0.16 MPMX20_02696 Murein tetrapeptide carboxypeptidase low > 85
Enterobacter asburiae PDN3 0.63 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.16 EX28DRAFT_0769 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.17 OHPLBJKB_02496 Murein tetrapeptide carboxypeptidase — —
Rahnella sp. WP5 0.63 EX31_RS19570 amidophosphoribosyltransferase 0.17 EX31_RS09000 LD-carboxypeptidase low > 89
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16445 amidophosphoribosyltransferase 0.20 HSERO_RS11050 peptidase S66 — —
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_06060 amidophosphoribosyltransferase 0.19 H281DRAFT_06199 muramoyltetrapeptide carboxypeptidase low > 103
Ralstonia solanacearum UW163 0.60 UW163_RS11175 amidophosphoribosyltransferase 0.20 UW163_RS13960 muramoyltetrapeptide carboxypeptidase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS02550 amidophosphoribosyltransferase 0.20 RALBFv3_RS00630 muramoyltetrapeptide carboxypeptidase — —
Paraburkholderia graminis OAS925 0.60 ABIE53_004816 amidophosphoribosyltransferase 0.20 ABIE53_002396 muramoyltetrapeptide carboxypeptidase — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS33840 amidophosphoribosyltransferase 0.20 BPHYT_RS11575 peptidase S66 — —
Ralstonia solanacearum PSI07 0.60 RPSI07_RS14765 amidophosphoribosyltransferase 0.20 RPSI07_RS16875 muramoyltetrapeptide carboxypeptidase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.57 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.15 GFF4699 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Acidovorax sp. GW101-3H11 0.57 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.17 Ac3H11_555 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Variovorax sp. OAS795 0.56 ABID97_RS21635 amidophosphoribosyltransferase 0.16 ABID97_RS16320 LD-carboxypeptidase — —
Variovorax sp. SCN45 0.56 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.17 GFF186 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) — —
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.21 Synpcc7942_1963 hypothetical protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS03735 amidophosphoribosyltransferase 0.12 A4249_RS10615 LD-carboxypeptidase — —

Not shown: 50 genomes with orthologs for PP_2000 only; 5 genomes with orthologs for PP_4799 only