Conservation of cofitness between PP_5085 and PP_4699 in Pseudomonas putida KT2440

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5085 malic enzyme B 1.0 PP_4699 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.50 4
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1545 NADP-dependent malic enzyme (EC 1.1.1.40) 0.83 Pf1N1B4_2854 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_09425 malate dehydrogenase 0.83 AO356_16060 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3762 NADP-dependent malic enzyme (EC 1.1.1.40) 0.83 Pf6N2E2_5153 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.21 102
Pseudomonas stutzeri RCH2 0.92 Psest_3721 Malic enzyme 0.78 Psest_0996 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Pseudomonas sp. RS175 0.92 PFR28_05005 NADP-dependent malic enzyme 0.82 PFR28_03721 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_283 NADP-dependent malic enzyme (EC 1.1.1.40) 0.84 PfGW456L13_1521 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_12460 malate dehydrogenase 0.84 AO353_14385 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) 0.85 Psyr_0828 ketopantoate hydroxymethyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) 0.85 Psyr_0828 ketopantoate hydroxymethyltransferase low > 86
Pseudomonas fluorescens SBW25 0.91 PFLU_RS01995 malate dehydrogenase 0.85 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS01995 malate dehydrogenase 0.85 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.23 85
Pseudomonas simiae WCS417 0.90 PS417_01950 malate dehydrogenase 0.86 PS417_23910 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 88
Pseudomonas sp. S08-1 0.88 OH686_10060 NADP-dependent malic enzyme 0.82 OH686_17245 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Marinobacter adhaerens HP15 0.75 HP15_472 malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+) 0.60 HP15_324 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_03668 NADP-dependent malic enzyme 0.58 MIT1002_03694 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Shewanella loihica PV-4 0.66 Shew_0383 malate dehydrogenase (RefSeq) 0.59 Shew_3133 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.66 Sama_0448 malate dehydrogenase (RefSeq) 0.58 Sama_0776 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO4118 malate oxidoreductase, putative (NCBI ptt file) 0.61 SO0870 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.64 Shewana3_3669 malic enzyme, NAD-binding (RefSeq) 0.60 Shewana3_3408 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13540 malate dehydrogenase 0.56 CSW01_03135 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU0414 tme NADP-dependent malic enzyme-related protein (TIGR) 0.40 DVU2446 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_1539 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) (RefSeq) 0.41 DvMF_2949 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) low > 51
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1297 Malate dehydrogenase (oxaloacetate decarboxylating) 0.34 Synpcc7942_2381 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0593 Malic enzyme 0.56 B158DRAFT_0061 ketopantoate hydroxymethyltransferase (EC 2.1.2.11) — —

Not shown: 0 genomes with orthologs for PP_5085 only; 74 genomes with orthologs for PP_4699 only