Conservation of cofitness between PP_4693 and PP_4560 in Pseudomonas putida KT2440

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4693 RNA polymerase-binding transcription factor DksA 1.0 PP_4560 putative Ribonuclease BN 0.53 6
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family 0.82 PfGW456L13_1913 Ribonuclease BN (EC 3.1.-.-) 0.36 37
Pseudomonas simiae WCS417 0.78 PS417_23875 molecular chaperone DnaK 0.75 PS417_22050 ribonuclease BN — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS25715 RNA polymerase-binding protein DksA 0.75 PFLU_RS23665 YihY/virulence factor BrkB family protein low > 109
Pseudomonas fluorescens SBW25 0.77 PFLU_RS25715 RNA polymerase-binding protein DksA 0.75 PFLU_RS23665 YihY/virulence factor BrkB family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_16095 molecular chaperone DnaK 0.80 AO356_05085 ribonuclease BN low > 104
Pseudomonas sp. RS175 0.77 PFR28_03714 RNA polymerase-binding transcription factor DksA 0.79 PFR28_00588 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family 0.81 Pf1N1B4_569 Ribonuclease BN (EC 3.1.-.-) — —
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_14420 molecular chaperone DnaK 0.85 AO353_03295 ribonuclease BN low > 101
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_0835 transcriptional regulator, TraR/DksA family 0.78 Psyr_3781 Ribonuclease BN low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_0835 transcriptional regulator, TraR/DksA family 0.78 Psyr_3781 Ribonuclease BN low > 86
Pseudomonas sp. S08-1 0.71 OH686_17280 RNA polymerase-binding protein DksA 0.49 OH686_07230 Inner membrane protein YihY, formerly thought to be RNase BN — —
Pseudomonas stutzeri RCH2 0.69 Psest_1003 RNA polymerase-binding protein DksA 0.59 Psest_2881 Predicted membrane protein — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_5160 C4-type zinc finger protein, DksA/TraR family 0.81 Pf6N2E2_2870 Ribonuclease BN (EC 3.1.-.-) low > 103
Shewanella loihica PV-4 0.63 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) 0.10 Shew_3545 rbn ribonuclease BN (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) 0.09 Sama_3404 rbn ribonuclease BN (RefSeq) low > 62
Shewanella oneidensis MR-1 0.60 SO0874 dksA DnaK suppressor protein (NCBI ptt file) 0.11 SO4401 rbn ribonuclease BN (NCBI ptt file) — —
Shewanella sp. ANA-3 0.60 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) 0.12 Shewana3_0311 rbn ribonuclease BN (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.59 MIT1002_03690 DnaK suppressor protein 0.20 MIT1002_02941 ribonuclease BN/unknown domain fusion protein low > 70
Agrobacterium fabrum C58 0.38 Atu1359 dnaK deletion suppressor protein 0.16 Atu3590 transporter low > 89
Azospirillum brasilense Sp245 0.37 AZOBR_RS11245 molecular chaperone DnaK 0.25 AZOBR_RS15035 membrane protein — —
Rhodospirillum rubrum S1H 0.36 Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) 0.17 Rru_A0430 Ribonuclease BN (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.36 TX73_020255 RNA polymerase-binding protein DksA 0.19 TX73_006405 YihY/virulence factor BrkB family protein low > 86
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11040 dnaK suppressor protein DksA 0.17 PGA1_c16090 putative tRNA-processing ribonuclease low > 62
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0274 transcriptional regulator, TraR/DksA family 0.12 Ga0059261_2467 Predicted membrane protein low > 68

Not shown: 47 genomes with orthologs for PP_4693 only; 5 genomes with orthologs for PP_4560 only