Conservation of cofitness between PP_3539 and PP_4549 in Pseudomonas putida KT2440

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3539 putative Transcriptional regulator 1.0 PP_4549 long-chain-fatty-acid/CoA ligase 0.20 2
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2595 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.90 PfGW456L13_1911 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 87
Pseudomonas sp. RS175 0.85 PFR28_01263 HTH-type transcriptional regulator CueR 0.90 PFR28_00585 Long-chain-fatty-acid--CoA ligase low > 88
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2188 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.91 Pf6N2E2_2872 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_01565 MerR family transcriptional regulator 0.90 AO356_05100 long-chain fatty acid--CoA ligase low > 104
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_20370 MerR family transcriptional regulator 0.91 AO353_03310 long-chain fatty acid--CoA ligase low > 101
Pseudomonas simiae WCS417 0.82 PS417_17000 MerR family transcriptional regulator 0.90 PS417_22065 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) low > 88
Pseudomonas fluorescens SBW25 0.82 PFLU_RS18950 MerR family DNA-binding transcriptional regulator 0.90 PFLU_RS23680 long-chain fatty acid--CoA ligase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS18950 MerR family DNA-binding transcriptional regulator 0.90 PFLU_RS23680 long-chain fatty acid--CoA ligase low > 109
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_2472 transcriptional regulator, MerR family 0.89 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_2472 transcriptional regulator, MerR family 0.89 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Pseudomonas sp. S08-1 0.76 OH686_00860 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.86 OH686_05750 Long-chain-fatty-acid--CoA ligase 0.67 6
Pseudomonas stutzeri RCH2 0.76 Psest_1075 Predicted transcriptional regulators 0.84 Psest_1335 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) low > 67
Marinobacter adhaerens HP15 0.57 HP15_1006 transcriptional regulator, MerR family 0.63 HP15_1864 acyl-CoA synthase low > 73
Shewanella oneidensis MR-1 0.56 SO1898 transcriptional regulator, putative (NCBI ptt file) 0.51 SO2581 fadD-1 long-chain-fatty-acid--CoA ligase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1673 MerR family transcriptional regulator (RefSeq) 0.52 Shewana3_2386 long-chain-fatty-acid--CoA ligase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.49 MIT1002_01670 Zn(II)-responsive regulator of zntA 0.50 MIT1002_02588 Long-chain-fatty-acid--CoA ligase low > 70
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2513 Predicted transcriptional regulators 0.51 B158DRAFT_1573 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 40
Sinorhizobium meliloti 1021 0.42 SMc01260 transcriptional regulator 0.48 SMc02162 long-chain-fatty-acid--CoA ligase low > 103
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS00860 MerR family transcriptional regulator 0.51 RR42_RS18150 long-chain fatty acid--CoA ligase low > 128
Rhizobium sp. OAE497 0.41 ABIE40_RS09800 MerR family DNA-binding transcriptional regulator 0.49 ABIE40_RS02155 long-chain fatty acid--CoA ligase low > 107
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2989 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family 0.50 Ac3H11_663 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 79
Azospirillum brasilense Sp245 0.39 AZOBR_RS10195 MerR family transcriptional regulator 0.30 AZOBR_RS31155 AMP-dependent synthetase low > 97
Castellaniella sp019104865 MT123 0.38 ABCV34_RS12375 MerR family DNA-binding transcriptional regulator 0.47 ABCV34_RS11410 AMP-binding protein low > 48
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS23435 MerR family transcriptional regulator 0.49 HSERO_RS19285 long-chain fatty acid--CoA ligase low > 78
Dinoroseobacter shibae DFL-12 0.32 Dshi_0840 transcriptional regulator, MerR family (RefSeq) 0.41 Dshi_1000 AMP-dependent synthetase and ligase (RefSeq) low > 64

Not shown: 6 genomes with orthologs for PP_3539 only; 46 genomes with orthologs for PP_4549 only