Conservation of cofitness between PP_3926 and PP_2160 in Pseudomonas putida KT2440

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3926 short-chain dehydrogenase 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.20 2
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_21495 short-chain dehydrogenase 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 101
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_3499 Short-chain dehydrogenase/reductase SDR 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas sp. RS175 0.93 PFR28_02397 3-oxoacyl-[acyl-carrier-protein] reductase FabG 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_23325 short-chain dehydrogenase 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_544 Short-chain dehydrogenase/reductase SDR 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 103
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS17045 SDR family oxidoreductase 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS17045 SDR family oxidoreductase 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_4527 Short-chain dehydrogenase/reductase SDR 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas simiae WCS417 0.93 PS417_15030 short-chain dehydrogenase 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_2456 Short-chain dehydrogenase/reductase SDR 0.82 Psyr_1907 GTP cyclohydrolase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_2456 Short-chain dehydrogenase/reductase SDR 0.82 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas sp. S08-1 0.88 OH686_03515 Oxidoreductase, short-chain dehydrogenase/reductase family 0.75 OH686_22700 queuine synthase low > 80
Pseudomonas stutzeri RCH2 0.87 Psest_2081 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.78 Psest_2714 7-cyano-7-deazaguanine reductase low > 67
Alteromonas macleodii MIT1002 0.68 MIT1002_02274 3-oxoacyl-[acyl-carrier-protein] reductase FabG 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 70
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS21160 SDR family oxidoreductase 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Marinobacter adhaerens HP15 0.67 HP15_825 short-chain dehydrogenase/reductase SDR 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS21885 SDR family oxidoreductase 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.24 42
Shewanella loihica PV-4 0.65 Shew_2862 short chain dehydrogenase (RefSeq) 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 60
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS28985 short-chain dehydrogenase 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3445 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF1559 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 90
Pectobacterium carotovorum WPP14 0.30 HER17_RS09865 SDR family oxidoreductase 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Variovorax sp. SCN45 0.29 GFF4970 Oxidoreductase, short-chain dehydrogenase/reductase family 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) low > 127
Rahnella sp. WP5 0.29 EX31_RS06780 glucose 1-dehydrogenase 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Variovorax sp. OAS795 0.28 ABID97_RS15765 SDR family oxidoreductase 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 91
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF2060 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Lysobacter sp. OAE881 0.26 ABIE51_RS02825 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS04030 SDR family oxidoreductase 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Rhodanobacter denitrificans MT42 0.24 LRK55_RS14065 SDR family oxidoreductase 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 63
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_12775 fabG SDR family oxidoreductase 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52

Not shown: 8 genomes with orthologs for PP_3926 only; 40 genomes with orthologs for PP_2160 only