| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_5337 | | LysR family transcriptional regulator | 1.0 | PP_1319 | | Ubiquinol--cytochrome c reductase, cytochrome c1 | 0.34 | 19 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_28125 | | LysR family transcriptional regulator | 0.85 | PS417_04165 | | cytochrome C | — | — |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS29810 | | LysR family transcriptional regulator | 0.85 | PFLU_RS04205 | | cytochrome c1 | 0.65 | 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS29810 | | LysR family transcriptional regulator | 0.85 | PFLU_RS04205 | | cytochrome c1 | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_09945 | | LysR family transcriptional regulator | 0.87 | AO353_15255 | | cytochrome C | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_743 | | Transcriptional regulator | 0.90 | PfGW456L13_1636 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_2026 | | Transcriptional regulator | 0.88 | Pf1N1B4_960 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 87 |
| Pseudomonas sp. RS175 | 0.90 | PFR28_04497 | | HTH-type transcriptional regulator YjiE | 0.90 | PFR28_03604 | | Ammonia monooxygenase gamma subunit | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_11085 | | LysR family transcriptional regulator | 0.90 | AO356_17075 | | cytochrome C | 0.28 | 33 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_4084 | | Transcriptional regulator | 0.89 | Pf6N2E2_5339 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | low | > 103 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_4073 | | Transcriptional regulator | 0.79 | Psest_3277 | | Cytochrome c1 | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_13320 | | LysR-family transcriptional regulator | 0.89 | OH686_08380 | | Ubiquinol-cytochrome C reductase, cytochrome C1 subunit | — | — |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS19265 | | LysR family transcriptional regulator | 0.37 | HSERO_RS20235 | | cytochrome C | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.35 | RR42_RS29580 | | LysR family transcriptional regulator | 0.37 | RR42_RS18815 | | cytochrome C | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF518 | | Transcriptional regulator | 0.35 | GFF1293 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | 0.59 | 18 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_1953 | | Transcriptional regulator | 0.32 | Ac3H11_4752 | | ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit | — | — |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS05925 | | LysR substrate-binding domain-containing protein | 0.29 | ABID97_RS22975 | | cytochrome c1 | low | > 91 |
| Variovorax sp. SCN45 | 0.33 | GFF4595 | | Transcriptional regulator | 0.31 | GFF6696 | | Ubiquinol-cytochrome C reductase, cytochrome C1 subunit | 0.55 | 63 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS02040 | | LysR family transcriptional regulator | 0.40 | UW163_RS06895 | | cytochrome c | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS11545 | | LysR family transcriptional regulator | 0.40 | RALBFv3_RS06720 | | cytochrome c | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS33805 | | LysR substrate-binding domain-containing protein | 0.35 | QEN71_RS27775 | | cytochrome c1 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS07510 | | LysR family transcriptional regulator | 0.39 | ABZR87_RS02375 | | cytochrome c1 | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS21665 | | LysR family transcriptional regulator | 0.39 | RPSI07_RS10515 | | cytochrome c | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS02375 | | LysR family transcriptional regulator | 0.40 | RS_RS14665 | | cytochrome c | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_04272 | | transcriptional regulator, LysR family | 0.37 | H281DRAFT_05671 | | ubiquinol-cytochrome c reductase cytochrome c1 subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_003512 | | DNA-binding transcriptional LysR family regulator | 0.37 | ABIE53_003683 | | ubiquinol-cytochrome c reductase cytochrome c1 subunit | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS16710 | | LysR family transcriptional regulator | 0.36 | BPHYT_RS17620 | | cytochrome C | low | > 109 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_205 | | protein containing bacterial regulatory protein, LysR domain | 0.51 | HP15_547 | | ubiquinol-cytochrome c reductase, cytochrome c1 | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_05675 | | HTH-type transcriptional regulator YjiE | 0.13 | MPMX19_05014 | | Cytochrome c1 | low | > 112 |
Not shown: 24 genomes with orthologs for PP_5337 only; 15 genomes with orthologs for PP_1319 only