Conservation of cofitness between PP_3415 and PP_0496 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3415 Transcriptional regulator, LacI family 1.0 PP_0496 Sodium/alanine symporter 0.30 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_3336 transcriptional regulator, LacI family 0.75 Psyr_5052 Sodium:alanine symporter low > 86
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_3336 transcriptional regulator, LacI family 0.75 Psyr_5052 Sodium:alanine symporter low > 86
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.74 PfGW456L13_741 sodium/alanine transporter low > 87
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.75 Pf1N1B4_2024 sodium/alanine transporter low > 87
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.77 Pf6N2E2_4086 sodium/alanine transporter low > 103
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_05065 LacI family transcriptional regulator 0.77 AO356_11095 sodium:alanine symporter low > 104
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_03255 LacI family transcriptional regulator 0.75 AO353_09955 sodium:alanine symporter low > 101
Pseudomonas sp. RS175 0.66 PFR28_00593 HTH-type transcriptional regulator GntR 0.77 PFR28_04500 Amino-acid carrier protein AlsT low > 88
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.76 PFLU_RS29820 alanine:cation symporter family protein low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.76 PFLU_RS29820 alanine:cation symporter family protein low > 109
Pseudomonas simiae WCS417 0.66 PS417_21990 LacI family transcriptional regulator 0.77 PS417_28135 sodium:alanine symporter low > 88
Castellaniella sp019104865 MT123 0.53 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator 0.23 ABCV34_RS11085 sodium:alanine symporter family protein 0.61 42
Pseudomonas stutzeri RCH2 0.48 Psest_2126 Transcriptional regulators 0.62 Psest_4077 amino acid carrier protein low > 67
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_01485 transcriptional regulator 0.44 CSW01_11935 sodium:alanine symporter family protein low > 62
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS10090 LacI family DNA-binding transcriptional regulator 0.20 QEN71_RS14800 amino acid carrier protein low > 153
Alteromonas macleodii MIT1002 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.34 MIT1002_01494 Amino-acid carrier protein AlsT low > 70
Klebsiella michiganensis M5al 0.30 BWI76_RS06150 transcriptional regulator 0.35 BWI76_RS04265 sodium:alanine symporter family protein low > 92
Rahnella sp. WP5 0.30 EX31_RS05060 gluconate operon transcriptional repressor GntR 0.35 EX31_RS03925 alanine:cation symporter family protein 0.37 21
Enterobacter sp. TBS_079 0.29 MPMX20_04319 HTH-type transcriptional regulator GntR 0.37 MPMX20_00715 Amino-acid carrier protein AlsT low > 85
Enterobacter asburiae PDN3 0.29 EX28DRAFT_4274 transcriptional regulator, LacI family 0.37 EX28DRAFT_3619 amino acid carrier protein low > 76
Sinorhizobium meliloti 1021 0.29 SM_b20667 LacI family transcriptional regulator 0.37 SMc04263 amino acid carrier transmembrane protein low > 103
Escherichia coli ECRC101 0.29 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.36 MCAODC_01600 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.34 ECOLIN_RS00040 sodium:alanine symporter family protein low > 52
Escherichia coli ECRC99 0.29 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.35 KEDOAH_17070 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC98 0.29 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.35 JDDGAC_14680 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC102 0.29 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.35 NIAGMN_08935 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC101 0.29 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.35 OKFHMN_11085 yaaJ Uncharacterized transporter YaaJ — —
Escherichia coli ECRC62 0.29 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.35 BNILDI_08190 yaaJ Uncharacterized transporter YaaJ — —
Escherichia fergusonii Becca 0.29 EFB2_00382 HTH-type transcriptional regulator GntR 0.35 EFB2_04036 Amino-acid carrier protein AlsT 0.56 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.35 OHPLBJKB_03653 Amino-acid carrier protein AlsT low > 73
Escherichia coli BW25113 0.29 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.35 b0007 yaaJ predicted transporter (NCBI) low > 76
Phaeobacter inhibens DSM 17395 0.29 PGA1_c33870 putative HTH-type transcriptional regulator GntR 0.27 PGA1_78p00280 putative sodium/alanine symporter low > 62
Escherichia coli ECOR38 0.29 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.35 HEPCGN_09090 yaaJ Uncharacterized transporter YaaJ low > 85
Escherichia coli ECOR27 0.28 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.35 NOLOHH_03415 yaaJ Uncharacterized transporter YaaJ low > 57
Escherichia coli BL21 0.28 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.35 ECD_00007 putative transporter low > 60
Dinoroseobacter shibae DFL-12 0.28 Dshi_3322 transcriptional regulator, LacI family (RefSeq) 0.21 Dshi_1808 amino acid carrier protein (RefSeq) low > 64
Serratia liquefaciens MT49 0.28 IAI46_23965 gluconate operon transcriptional repressor GntR 0.41 IAI46_03050 sodium:alanine symporter family protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF406 Transcriptional regulator, LacI family 0.38 GFF1082 Putative alanine/glycine transport protein low > 78

Not shown: 24 genomes with orthologs for PP_3415 only; 18 genomes with orthologs for PP_0496 only