Conservation of cofitness between PFLU_RS29215 and PFLU_RS18940 in Pseudomonas fluorescens SBW25

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS29215 response regulator transcription factor 1.0 PFLU_RS18940 acyl-CoA dehydrogenase 0.95 7
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS29215 response regulator transcription factor 1.00 PFLU_RS18940 acyl-CoA dehydrogenase 0.44 7
Pseudomonas simiae WCS417 0.99 PS417_27535 chemotaxis protein CheY 1.00 PS417_16990 acyl-CoA dehydrogenase 0.47 1
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_08995 chemotaxis protein CheY 0.97 AO353_20380 acyl-CoA dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_2184 Autolysis response regulater LytR 0.97 Pf1N1B4_3993 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.47 8
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_855 Autolysis response regulater LytR 0.97 PfGW456L13_2597 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) low > 87
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4430 Autolysis response regulater LytR 0.97 Pf6N2E2_2186 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) low > 103
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_12785 chemotaxis protein CheY 0.98 AO356_01555 acyl-CoA dehydrogenase low > 104
Pseudomonas sp. RS175 0.86 PFR28_04366 Sensory transduction protein LytR 0.98 PFR28_01265 (R)-benzylsuccinyl-CoA dehydrogenase low > 88
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_0063 Two-component response regulator AlgR 0.93 Psyr_2474 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_0063 Two-component response regulator AlgR 0.93 Psyr_2474 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas stutzeri RCH2 0.80 Psest_3749 Response regulator of the LytR/AlgR family 0.87 Psest_2128 Acyl-CoA dehydrogenases low > 67
Pseudomonas putida KT2440 0.80 PP_0185 Positive alginate biosynthesis regulatory protein 0.93 PP_2437 putative Acyl-CoA dehydrogenase 0.21 45
Pseudomonas sp. S08-1 0.77 OH686_13895 Alginate biosynthesis two-component system response regulator AlgR 0.91 OH686_00885 Acyl-CoA dehydrogenase low > 80
Acinetobacter radioresistens SK82 0.43 MPMX26_00187 Transcriptional regulatory protein YpdB 0.57 MPMX26_01461 (R)-benzylsuccinyl-CoA dehydrogenase low > 36
Marinobacter adhaerens HP15 0.39 HP15_241 alginate biosynthesis regulatory protein AlgR-like protein 0.65 HP15_3923 acyl-CoA dehydrogenase family protein low > 73
Acidovorax sp. GW101-3H11 0.26 Ac3H11_1634 Response regulator receiver:LytTr DNA-binding region 0.66 Ac3H11_1051 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF738 Autolysis response regulater LytR 0.67 GFF4493 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) low > 90
Variovorax sp. OAS795 0.25 ABID97_RS08200 LytTR family DNA-binding domain-containing protein 0.68 ABID97_RS17025 acyl-CoA dehydrogenase family protein low > 91
Ralstonia solanacearum PSI07 0.22 RPSI07_RS17365 DNA-binding response regulator 0.67 RPSI07_RS14530 acyl-CoA dehydrogenase low > 81
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS00120 DNA-binding response regulator 0.66 RALBFv3_RS02780 acyl-CoA dehydrogenase low > 76
Ralstonia solanacearum UW163 0.22 UW163_RS13450 DNA-binding response regulator 0.66 UW163_RS10945 acyl-CoA dehydrogenase — —
Variovorax sp. SCN45 0.22 GFF3826 Response regulator receiver:LytTr DNA-binding region 0.67 GFF365 Acyl-CoA dehydrogenase low > 127
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS11570 LytTR family DNA-binding domain-containing protein 0.66 ABZR87_RS14705 acyl-CoA dehydrogenase family protein low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS06780 DNA-binding response regulator 0.66 RS_RS10150 acyl-CoA dehydrogenase low > 80
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_0044 two component transcriptional regulator, LytTR family 0.58 Ga0059261_0847 Acyl-CoA dehydrogenases low > 68
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS12225 LytR family transcriptional regulator 0.66 RR42_RS05715 acyl-CoA dehydrogenase low > 128
Alteromonas macleodii MIT1002 0.19 MIT1002_01189 Transcriptional regulatory protein YehT 0.59 MIT1002_02317 (R)-benzylsuccinyl-CoA dehydrogenase low > 70
Azospirillum sp. SherDot2 0.15 MPMX19_06239 Transcriptional regulatory protein BtsR 0.31 MPMX19_02787 (R)-benzylsuccinyl-CoA dehydrogenase low > 112
Azospirillum brasilense Sp245 0.15 AZOBR_RS22560 transcriptional regulator 0.32 AZOBR_RS09415 acyl-CoA dehydrogenase — —
Shewanella loihica PV-4 0.14 Shew_2329 putative two-component response-regulatory protein YehT (RefSeq) 0.64 Shew_2860 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 60

Not shown: 51 genomes with orthologs for PFLU_RS29215 only; 12 genomes with orthologs for PFLU_RS18940 only