| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS04350 | | metalloprotease PmbA | 1.0 | PFLU_RS06640 | | high-affinity branched-chain amino acid ABC transporter permease LivH | 0.64 | 13 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS04350 | | metalloprotease PmbA | 1.00 | PFLU_RS06640 | | high-affinity branched-chain amino acid ABC transporter permease LivH | 0.35 | 31 |
| Pseudomonas simiae WCS417 | 0.98 | PS417_04295 | | peptidase PmbA | 1.00 | PS417_06610 | | branched-chain amino acid transporter permease subunit LivH | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_07085 | | peptidase PmbA | 0.91 | AO356_05325 | | branched-chain amino acid transporter permease subunit LivH | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.91 | Pf6N2E2_2923 | | ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) | low | > 103 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_00163 | | Metalloprotease PmbA | 0.99 | PFR28_00539 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_05205 | | peptidase PmbA | 0.92 | AO353_17120 | | branched-chain amino acid transporter permease subunit LivH | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.91 | PfGW456L13_4608 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.90 | Pf1N1B4_3217 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 87 |
| Pseudomonas putida KT2440 | 0.90 | PP_0942 | | regulatory protease | 0.92 | PP_1140 | | branched chain amino acid transporter - permease subunit | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.86 | Psyr_3846 | | L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.86 | Psyr_3846 | | L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein | low | > 86 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.82 | OH686_04610 | | Branched-chain amino acid ABC transporter, permease protein LivH | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.85 | Psest_1311 | | Branched-chain amino acid ABC-type transport system, permease components | low | > 67 |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS20090 | | metalloprotease PmbA | 0.68 | HER17_RS00500 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Rahnella sp. WP5 | 0.49 | EX31_RS12320 | | metalloprotease PmbA | 0.67 | EX31_RS14800 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 89 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.66 | EX28DRAFT_4289 | | Branched-chain amino acid ABC-type transport system, permease components | low | > 76 |
| Escherichia fergusonii Becca | 0.48 | EFB2_04298 | | Metalloprotease PmbA | 0.64 | EFB2_00365 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 86 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_00517 | | Metalloprotease PmbA | 0.65 | MPMX20_04333 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 85 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.64 | MCAODC_07275 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 87 |
| Escherichia coli BL21 | 0.48 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.64 | ECD_03306 | | branched-chain amino acid ABC transporter permease | low | > 61 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.64 | NIAGMN_14515 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC62 | 0.48 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.64 | BNILDI_02965 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Escherichia coli BW25113 | 0.48 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.64 | b3457 | livH | leucine/isoleucine/valine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.64 | HEPCGN_15565 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 87 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.64 | ECOLIN_RS19770 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 55 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.64 | NOLOHH_08540 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.64 | JDDGAC_20375 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.64 | KEDOAH_11395 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.64 | OKFHMN_16745 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.64 | OHPLBJKB_00246 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 73 |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS02850 | | metalloprotease PmbA | 0.66 | BWI76_RS26345 | | branched-chain amino acid ABC transporter permease LivH | low | > 92 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22575 | | metalloprotease PmbA | 0.69 | IAI46_00965 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.65 | GFF549 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.65 | LU632_RS19250 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 74 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01415 | | metalloprotease PmbA | 0.68 | HGI48_RS20725 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 71 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01480 | | metalloprotease PmbA | 0.68 | DZA65_RS21735 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01500 | | metalloprotease PmbA | 0.67 | DDA3937_RS00665 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 74 |
| Pantoea sp. MT58 | 0.46 | IAI47_02765 | | metalloprotease PmbA | 0.65 | IAI47_01570 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 76 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.57 | ABID97_RS27580 | | branched-chain amino acid ABC transporter permease LivH | low | > 91 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.61 | HSERO_RS08275 | | branched-chain amino acid transporter permease subunit LivH | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14750 | | peptidase PMbA | 0.64 | RR42_RS14420 | | branched-chain amino acid transporter permease subunit LivH | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10610 | | metalloprotease PmbA | 0.58 | ABCV34_RS03620 | | branched-chain amino acid ABC transporter permease LivH | low | > 48 |
| Synechococcus elongatus PCC 7942 | 0.06 | Synpcc7942_1289 | pmbA | putative modulator of DNA gyrase | 0.29 | Synpcc7942_2495 | natD | integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD | low | > 38 |
Not shown: 43 genomes with orthologs for PFLU_RS04350 only; 3 genomes with orthologs for PFLU_RS06640 only