| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_00858 | | Flagellar biosynthetic protein FliP | 1.0 | MPMX19_04087 | | Flagellum site-determining protein YlxH | 0.88 | 17 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS03145 | | flagellar biosynthetic protein FliP | 0.65 | AMB_RS02555 | | cobyrinic acid a,c-diamide synthase | low | > 64 |
| Rhodospirillum rubrum S1H | 0.50 | Rru_A2830 | | Flagellar transport protein FliP (NCBI) | 0.60 | Rru_A0532 | | Cobyrinic acid a,c-diamide synthase (NCBI) | — | — |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_1414 | | Flagellar biosynthesis protein FliP | 0.23 | Ac3H11_4151 | | Flagellar synthesis regulator FleN | low | > 79 |
| Shewanella oneidensis MR-1 | 0.44 | SO3218 | fliP | flagellar biosynthetic protein FliP (NCBI ptt file) | 0.20 | SO3211 | flhG | flagellar biosynthetic protein FlhG (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_1352 | fliP | flagellar biosynthesis protein FliP (RefSeq) | 0.21 | Shewana3_1358 | | cobyrinic acid a,c-diamide synthase (RefSeq) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS28845 | | flagellar type III secretion system pore protein FliP | 0.15 | QEN71_RS28945 | | AAA family ATPase | 0.92 | 74 |
| Pseudomonas segetis P6 | 0.43 | MPMX49_03134 | | Flagellar biosynthetic protein FliP | 0.23 | MPMX49_03128 | | Flagellum site-determining protein YlxH | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_3444 | | Flagellar transport protein FliP | 0.22 | Psyr_3438 | | Cobyrinic acid a,c-diamide synthase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.43 | GEMAOFIL_04146 | | Flagellar biosynthetic protein FliP | 0.22 | GEMAOFIL_04139 | | Flagellum site-determining protein YlxH | low | > 93 |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_3444 | | Flagellar transport protein FliP | 0.22 | Psyr_3438 | | Cobyrinic acid a,c-diamide synthase | — | — |
| Pseudomonas stutzeri RCH2 | 0.43 | Psest_1732 | | flagellar biosynthetic protein FliP | 0.22 | Psest_1739 | | ATPases involved in chromosome partitioning | — | — |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS00620 | fliP | flagellar type III secretion system pore protein FliP | 0.22 | JOY50_RS00590 | fleN | flagellar synthesis regulator FleN | low | > 84 |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_2580 | | Flagellar biosynthesis protein FliP | 0.22 | Pf6N2E2_2574 | | Flagellar synthesis regulator FleN | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_18745 | | flagellar biosynthesis protein flip | 0.22 | AO353_18780 | | cobyrinic acid a,c-diamide synthase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_03770 | | flagellar biosynthesis protein flip | 0.22 | AO356_03735 | | cobyrinic acid a,c-diamide synthase | — | — |
| Pseudomonas sp. SVBP6 | 0.42 | COO64_RS21215 | fliP | flagellar type III secretion system pore protein FliP | 0.22 | COO64_RS25620 | fleN | flagellar synthesis regulator FleN | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS21710 | | flagellar type III secretion system pore protein FliP | 0.22 | PFLU_RS21665 | | MinD/ParA family protein | low | > 109 |
| Pseudomonas aeruginosa PA14 | 0.42 | IKLFDK_06875 | | flagellar biosynthetic protein FliP | 0.22 | IKLFDK_06915 | | flagellar synthesis regulator FleN | low | > 100 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS21710 | | flagellar type III secretion system pore protein FliP | 0.22 | PFLU_RS21665 | | MinD/ParA family protein | 0.25 | 96 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_02770 | | flagellar biosynthetic protein FliP | 0.21 | OH686_02735 | | Flagellar synthesis regulator FleN | low | > 80 |
| Pseudomonas putida KT2440 | 0.42 | PP_4355 | | flagellar export apparatus subunit | 0.22 | PP_4342 | | flagellar synthesis regulator, putative ATPase | 0.21 | 91 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4339 | | Flagellar biosynthesis protein FliP | 0.22 | PfGW456L13_4332 | | Flagellar synthesis regulator FleN | low | > 87 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_01095 | | Flagellar biosynthetic protein FliP precursor | 0.22 | MIT1002_01102 | | Flagellum site-determining protein YlxH | low | > 70 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_19740 | | flagellar biosynthesis protein flip | 0.22 | PS417_19700 | | cobyrinic acid a,c-diamide synthase | — | — |
| Pseudomonas sp. DMC3 | 0.42 | GFF2463 | | Flagellar biosynthetic protein FliP | 0.22 | GFF2471 | | Flagellum site-determining protein YlxH | low | > 89 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_00845 | | Flagellar biosynthetic protein FliP | 0.22 | PFR28_00851 | | Flagellum site-determining protein YlxH | low | > 88 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_2312 | | flagellar biosynthesis protein FliP | 0.20 | HP15_2303 | | flagellar synthesis regulator FleN | low | > 73 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.36 | DVU0044 | fliP | flagellar biosynthetic protein fliP (TIGR) | 0.29 | DVU1863 | | flagellar synthesis regulator FleN, putative (TIGR) | 0.88 | 24 |
| Desulfovibrio vulgaris Miyazaki F | 0.34 | DvMF_2215 | fliP | flagellar biosynthesis protein FliP (RefSeq) | 0.29 | DvMF_0557 | | flagellar synthesis regulator FleN, putative (RefSeq) | 0.79 | 41 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1746 | | flagellar biosynthetic protein FliP | 0.12 | Dsui_1725 | | ATPase involved in chromosome partitioning | low | > 51 |
Not shown: 52 genomes with orthologs for MPMX19_00858 only; 5 genomes with orthologs for MPMX19_04087 only