Conservation of cofitness between IAI46_20390 and IAI46_01945 in Serratia liquefaciens MT49

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_20390 N-acetylmuramoyl-L-alanine amidase 1.0 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.47 15
Pectobacterium carotovorum WPP14 0.79 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC 0.82 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.80 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.65 25
Escherichia coli ECRC102 0.76 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.82 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR38 0.76 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.82 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.78 24
Escherichia coli ECRC100 0.76 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.82 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC99 0.76 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.82 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC62 0.76 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.81 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli Nissle 1917 0.76 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC 0.82 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia coli ECRC98 0.76 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.82 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB low > 86
Escherichia coli ECRC101 0.76 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.81 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Escherichia fergusonii Becca 0.76 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC 0.81 EFB2_00657 tRNA pseudouridine synthase B low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC 0.82 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Escherichia coli ECOR27 0.76 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.81 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli BW25113 0.76 b2817 b2817 putative amidase (VIMSS) 0.82 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia coli BL21 0.76 ECD_02665 N-acetylmuramoyl-L-alanine amidase 0.82 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Dickeya dianthicola ME23 0.76 DZA65_RS05345 N-acetylmuramoyl-L-alanine amidase 0.80 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.58 51
Dickeya dianthicola 67-19 0.76 HGI48_RS05005 N-acetylmuramoyl-L-alanine amidase 0.81 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Dickeya dadantii 3937 0.75 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase 0.82 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Enterobacter asburiae PDN3 0.75 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase 0.81 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC 0.81 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Pantoea sp. MT58 0.74 IAI47_03980 N-acetylmuramoyl-L-alanine amidase 0.77 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase 0.79 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Erwinia tracheiphila SCR3 0.68 LU632_RS06215 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.81 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Dechlorosoma suillum PS 0.48 Dsui_3500 N-acetylmuramoyl-L-alanine amidase 0.42 Dsui_2720 tRNA pseudouridine 55 synthase — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS04210 N-acetylmuramoyl-L-alanine amidase 0.43 HSERO_RS17985 tRNA pseudouridine synthase B — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS12185 N-acetylmuramoyl-L-alanine amidase 0.39 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05110 N-acetylmuramoyl-L-alanine amidase 0.39 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS08515 N-acetylmuramoyl-L-alanine amidase 0.39 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas stutzeri RCH2 0.35 Psest_0680 N-acetylmuramoyl-L-alanine amidase 0.50 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas putida KT2440 0.34 PP_4897 N-acetylmuramoyl-L-alanine amidase 0.49 PP_4710 tRNA pseudouridine 55 synthase low > 96
Pseudomonas sp. RS175 0.33 PFR28_05118 N-acetylmuramoyl-L-alanine amidase AmiC 0.48 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.48 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_1415 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.48 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_10120 N-acetylmuramoyl-L-alanine amidase 0.48 AO353_05550 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_3617 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.48 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.48 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.31 PFLU_RS02555 AMIN domain-containing protein 0.47 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS02555 AMIN domain-containing protein 0.47 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.26 55
Pseudomonas simiae WCS417 0.31 PS417_02475 N-acetylmuramoyl-L-alanine amidase 0.47 PS417_23960 pseudouridine synthase — —
Pseudomonas sp. S08-1 0.30 OH686_09485 N-acetylmuramoyl-L-alanine amidase 0.47 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_1949 N-acetylmuramoyl-L-alanine amidase 0.51 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40
Rhizobium sp. OAE497 0.19 ABIE40_RS07550 N-acetylmuramoyl-L-alanine amidase 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB — —
Phaeobacter inhibens DSM 17395 0.17 PGA1_c20290 putative N-acetylmuramoyl-L-alanine amidase AmiC 0.30 PGA1_c32950 tRNA pseudouridine synthase B low > 62
Agrobacterium fabrum C58 0.16 Atu1340 N-acetylmuramoyl-L-alanine amidase 0.27 Atu0085 tRNA pseudouridine 55 synthase — —
Synechococcus elongatus PCC 7942 0.13 Synpcc7942_2360 amiA N-acetylmuramoyl-L-alanine amidase 0.22 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38

Not shown: 3 genomes with orthologs for IAI46_20390 only; 31 genomes with orthologs for IAI46_01945 only