Conservation of cofitness between IAI46_03280 and IAI46_01060 in Serratia liquefaciens MT49

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_03280 DNA polymerase II 1.0 IAI46_01060 DNA recombination protein RmuC 0.66 18
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.32 Psyr_3666 Protein of unknown function DUF195 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.32 Psyr_3666 Protein of unknown function DUF195 low > 86
Pseudomonas sp. RS175 0.77 PFR28_01299 DNA polymerase II 0.32 PFR28_03190 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.31 Pf6N2E2_5759 DNA recombination protein RmuC low > 103
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.31 Pf1N1B4_3724 DNA recombination protein RmuC low > 87
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.31 PfGW456L13_4224 DNA recombination protein RmuC low > 87
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_29350 DNA polymerase II 0.32 AO353_02560 recombinase RmuC 0.54 11
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_01325 DNA polymerase II 0.32 AO356_19220 recombinase RmuC low > 104
Rahnella sp. WP5 0.77 EX31_RS03740 DNA polymerase II 0.76 EX31_RS14630 DNA recombination protein RmuC low > 89
Pseudomonas stutzeri RCH2 0.76 Psest_1519 DNA polymerase elongation subunit (family B) 0.29 Psest_1525 Uncharacterized protein conserved in bacteria low > 67
Pectobacterium carotovorum WPP14 0.75 HER17_RS02995 DNA polymerase II 0.73 HER17_RS20615 DNA recombination protein RmuC low > 75
Pseudomonas simiae WCS417 0.74 PS417_09565 DNA polymerase II 0.32 PS417_19970 recombinase RmuC low > 88
Pseudomonas sp. S08-1 0.74 OH686_16850 DNA polymerase II 0.30 OH686_22920 DNA recombination protein RmuC low > 80
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS10185 DNA polymerase II 0.32 PFLU_RS21940 DNA recombination protein RmuC low > 109
Pseudomonas fluorescens SBW25 0.73 PFLU_RS10185 DNA polymerase II 0.32 PFLU_RS21940 DNA recombination protein RmuC low > 109
Dickeya dianthicola 67-19 0.73 HGI48_RS18165 DNA polymerase II 0.68 HGI48_RS00890 DNA recombination protein RmuC low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS19305 DNA polymerase II 0.66 DZA65_RS00950 DNA recombination protein RmuC low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS18230 DNA polymerase II 0.66 DDA3937_RS20335 DNA recombination protein RmuC low > 74
Pseudomonas putida KT2440 0.73 PP_2393 DNA polymerase II 0.31 PP_1694 DNA recombination limiting inversions protein low > 96
Erwinia tracheiphila SCR3 0.72 LU632_RS02810 polB DNA polymerase II 0.67 LU632_RS24010 rmuC DNA recombination protein RmuC low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF182 DNA polymerase II (EC 2.7.7.7) 0.63 GFF259 DNA recombination protein RmuC low > 78
Pantoea sp. MT58 0.71 IAI47_16050 DNA polymerase II 0.67 IAI47_18290 DNA recombination protein RmuC low > 76
Escherichia coli BL21 0.71 ECD_00062 DNA polymerase II 0.64 ECD_03725 DNA recombination protein low > 60
Escherichia coli ECOR38 0.71 HEPCGN_08785 polB DNA polymerase II 0.64 HEPCGN_12940 rmuC DNA recombination protein RmuC low > 85
Escherichia coli BW25113 0.71 b0060 polB DNA polymerase II (NCBI) 0.64 b3832 rmuC predicted recombination limiting protein (NCBI) low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_00754 DNA polymerase II 0.65 MPMX20_04448 hypothetical protein low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03598 DNA polymerase II 0.64 OHPLBJKB_04219 hypothetical protein low > 73
Escherichia coli ECRC98 0.71 JDDGAC_14390 polB DNA polymerase II 0.64 JDDGAC_17935 rmuC DNA recombination protein RmuC — —
Escherichia fergusonii Becca 0.71 EFB2_03985 DNA polymerase II 0.64 EFB2_04783 hypothetical protein low > 86
Escherichia coli ECRC101 0.71 OKFHMN_10795 polB DNA polymerase II 0.64 OKFHMN_14310 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC99 0.71 KEDOAH_17360 polB DNA polymerase II 0.64 KEDOAH_13840 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC101 0.71 MCAODC_01310 polB DNA polymerase II 0.64 MCAODC_04815 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC102 0.71 NIAGMN_08645 polB DNA polymerase II 0.64 NIAGMN_12065 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC62 0.71 BNILDI_08465 polB DNA polymerase II 0.64 BNILDI_05090 rmuC DNA recombination protein RmuC — —
Escherichia coli ECOR27 0.71 NOLOHH_03140 polB DNA polymerase II 0.64 NOLOHH_06440 rmuC DNA recombination protein RmuC low > 57
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00320 DNA polymerase II 0.64 ECOLIN_RS22110 DNA recombination protein RmuC low > 52
Enterobacter asburiae PDN3 0.70 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.65 EX28DRAFT_4497 Uncharacterized protein conserved in bacteria low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS04575 DNA polymerase II 0.65 BWI76_RS01300 DNA recombination protein RmuC low > 92
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06130 DNA polymerase II 0.47 CSW01_00440 DNA recombination protein RmuC low > 62
Shewanella loihica PV-4 0.39 Shew_2482 DNA polymerase II (RefSeq) 0.41 Shew_2124 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.39 Shewana3_2629 DNA polymerase II (RefSeq) 0.41 Shewana3_2235 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.41 SO2041 conserved hypothetical protein (NCBI ptt file) low > 76

Not shown: 11 genomes with orthologs for IAI46_03280 only; 4 genomes with orthologs for IAI46_01060 only