Conservation of cofitness between HSERO_RS14740 and HSERO_RS23825 in Herbaspirillum seropedicae SmR1

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS14740 efflux transmembrane protein 1.0 HSERO_RS23825 hypothetical protein 0.37 6
Paraburkholderia graminis OAS925 0.59 ABIE53_003475 DHA1 family inner membrane transport protein 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 113
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS02210 MFS transporter 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 153
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_04235 MFS transporter, DHA1 family, arabinose polymer transporter 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 103
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS16520 major facilitator superfamily protein 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 109
Variovorax sp. OAS795 0.56 ABID97_RS15820 MFS transporter 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 91
Variovorax sp. SCN45 0.56 GFF1366 Uncharacterized MFS-type transporter 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 127
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS33820 arabinose transporter permease 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Enterobacter sp. TBS_079 0.46 MPMX20_00893 Inner membrane transport protein YdhP 0.17 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2686 Arabinose efflux permease 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF4040 Putative drug efflux protein 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.28 64
Pectobacterium carotovorum WPP14 0.44 HER17_RS09415 MFS transporter 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Alteromonas macleodii MIT1002 0.44 MIT1002_01181 Inner membrane transport protein YdhP 0.12 MIT1002_02542 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 70
Klebsiella michiganensis M5al 0.43 BWI76_RS05420 MFS transporter 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 92
Rahnella sp. WP5 0.43 EX31_RS21215 MFS transporter 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 89
Marinobacter adhaerens HP15 0.43 HP15_2719 transmembrane efflux protein 0.17 HP15_1540 protein YfcK low > 73
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS02135 MFS transporter 0.11 A4249_RS15340 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD low > 48
Pseudomonas putida KT2440 0.42 PP_2535 putative inner membrane transport protein 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Dickeya dadantii 3937 0.41 DDA3937_RS03650 MFS transporter 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS00250 MFS transporter 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia coli ECRC102 0.40 NIAGMN_00665 ydhP Inner membrane transport protein YdhP 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC99 0.40 KEDOAH_00710 ydhP Inner membrane transport protein YdhP 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC100 0.40 OKFHMN_27400 ydhP Inner membrane transport protein YdhP 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia coli ECRC101 0.40 MCAODC_18010 ydhP Inner membrane transport protein YdhP 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.49 48
Escherichia coli ECRC98 0.40 JDDGAC_01990 ydhP Inner membrane transport protein YdhP 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Acinetobacter radioresistens SK82 0.40 MPMX26_03004 Inner membrane transport protein YdhP 0.09 MPMX26_02642 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 36
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS14930 MFS transporter 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS12400 MFS transporter 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Shewanella sp. ANA-3 0.40 Shewana3_3597 major facilitator transporter (RefSeq) 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) low > 73
Escherichia coli BW25113 0.40 b1657 ydhP predicted transporter (NCBI) 0.20 b2324 b2324 putative peptidase (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_02068 Inner membrane transport protein YdhP 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 73
Escherichia coli ECOR27 0.40 NOLOHH_17920 ydhP Inner membrane transport protein YdhP 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli BL21 0.40 ECD_01627 putative MFS transporter, inner membrane protein 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme low > 61
Escherichia coli ECRC62 0.40 BNILDI_16710 ydhP Inner membrane transport protein YdhP 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli Nissle 1917 0.40 ECOLIN_RS09235 MFS transporter 0.20 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 55
Escherichia coli ECOR38 0.39 HEPCGN_05785 ydhP Inner membrane transport protein YdhP 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Ralstonia solanacearum GMI1000 0.39 RS_RS05745 MFS transporter 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia fergusonii Becca 0.39 EFB2_02336 Inner membrane transport protein YdhP 0.20 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 86
Acidovorax sp. GW101-3H11 0.37 Ac3H11_1989 Putative drug efflux protein 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79
Erwinia tracheiphila SCR3 0.35 LU632_RS24930 MFS transporter 0.14 LU632_RS07800 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Pseudomonas stutzeri RCH2 0.29 Psest_1374 Arabinose efflux permease 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 67

Not shown: 15 genomes with orthologs for HSERO_RS14740 only; 24 genomes with orthologs for HSERO_RS23825 only