Conservation of cofitness between HSERO_RS01325 and HSERO_RS15070 in Herbaspirillum seropedicae SmR1

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01325 cation/multidrug efflux protein 1.0 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D 0.38 8
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS11125 efflux RND transporter permease subunit 0.32 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pseudomonas sp. S08-1 0.49 OH686_06740 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.34 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Acinetobacter radioresistens SK82 0.49 MPMX26_03010 Cobalt-zinc-cadmium resistance protein CzcA 0.30 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Pseudomonas putida KT2440 0.49 PP_1517 RND efflux transporter 0.36 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Lysobacter sp. OAE881 0.48 ABIE51_RS17595 efflux RND transporter permease subunit 0.35 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Azospirillum sp. SherDot2 0.48 MPMX19_05260 Cobalt-zinc-cadmium resistance protein CzcA 0.29 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01385 AcrB/AcrD/AcrF family protein 0.45 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS14695 AcrB/AcrD/AcrF family protein 0.45 UW163_RS14830 RluA family pseudouridine synthase — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS13180 efflux RND transporter permease subunit 0.44 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.46 RPSI07_RS16100 AcrB/AcrD/AcrF family protein 0.45 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.46 RS_RS08335 AcrB/AcrD/AcrF family protein 0.46 RS_RS08205 RluA family pseudouridine synthase low > 80
Variovorax sp. SCN45 0.43 GFF493 RND efflux system, inner membrane transporter 0.31 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Variovorax sp. OAS795 0.43 ABID97_RS17615 efflux RND transporter permease subunit 0.30 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4033 Probable transmembrane drug efflux protein 0.31 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0346 Acriflavin resistance protein 0.35 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.30 59
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0346 Acriflavin resistance protein 0.35 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Sinorhizobium meliloti 1021 0.42 SM_b20345 efflux protein 0.29 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Pectobacterium carotovorum WPP14 0.38 HER17_RS07500 efflux RND transporter permease subunit 0.33 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Dickeya dianthicola ME23 0.38 DZA65_RS08250 efflux RND transporter permease subunit 0.34 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Rahnella sp. WP5 0.38 EX31_RS17700 efflux RND transporter permease subunit 0.34 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Dickeya dadantii 3937 0.37 DDA3937_RS04730 efflux RND transporter permease subunit 0.34 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS07915 efflux RND transporter permease subunit 0.34 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Klebsiella michiganensis M5al 0.35 BWI76_RS05720 cation/multidrug efflux pump 0.34 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Enterobacter sp. TBS_079 0.35 MPMX20_02160 Nickel and cobalt resistance protein CnrA 0.34 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Pantoea sp. MT58 0.35 IAI47_21725 efflux RND transporter permease subunit 0.33 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.557.1 cation efflux system protein 0.35 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Enterobacter asburiae PDN3 0.35 EX28DRAFT_1393 Cation/multidrug efflux pump 0.34 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01866 cation/multidrug efflux pump acrB4 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Caulobacter crescentus NA1000 0.34 CCNA_01866 cation/multidrug efflux pump acrB4 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 66
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_08410 AcrB/AcrD/AcrF family protein 0.31 CSW01_03695 ribosomal large subunit pseudouridine synthase D low > 62
Alteromonas macleodii MIT1002 0.25 MIT1002_01561 Swarming motility protein SwrC 0.35 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Parabacteroides merdae CL09T00C40 0.22 HMPREF1078_RS01920 efflux RND transporter permease subunit 0.27 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Fusobacterium nucleatum SB010 0.21 HUW76_07495 efflux RND transporter permease subunit 0.25 HUW76_08575 RluA family pseudouridine synthase low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_20140 acriflavin resistance protein 0.30 CA264_15205 RNA pseudouridine synthase low > 74

Not shown: 34 genomes with orthologs for HSERO_RS01325 only; 26 genomes with orthologs for HSERO_RS15070 only