| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 1.0 | HSERO_RS13735 | | UDP-glucose 4-epimerase | 0.26 | 10 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.17 | ABID97_RS11875 | | NAD-dependent epimerase/dehydratase family protein | low | > 91 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | 0.14 | RR42_RS15815 | | NAD-dependent dehydratase | — | — |
| Pseudomonas putida KT2440 | 0.35 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | 0.27 | PP_0501 | | NAD-dependent epimerase/dehydratase family protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.25 | PFLU_RS02390 | | NAD-dependent epimerase/dehydratase family protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.25 | PFLU_RS02390 | | NAD-dependent epimerase/dehydratase family protein | — | — |
| Pseudomonas sp. S08-1 | 0.35 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.25 | OH686_15630 | | UDP-glucose 4-epimerase | — | — |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.26 | Psest_3572 | | Nucleoside-diphosphate-sugar epimerases | — | — |
| Pseudomonas simiae WCS417 | 0.35 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | 0.25 | PS417_02315 | | NAD-dependent dehydratase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | 0.25 | AO353_06770 | | NAD-dependent dehydratase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | 0.25 | AO356_14875 | | NAD-dependent dehydratase | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_0294 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.20 | Dsui_0401 | | nucleoside-diphosphate-sugar epimerase | low | > 51 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.25 | PFR28_03960 | | UDP-glucose 4-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.26 | Psyr_4475 | | NAD-dependent epimerase/dehydratase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.26 | Psyr_4475 | | NAD-dependent epimerase/dehydratase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.25 | PfGW456L13_1301 | | UDP-glucose 4-epimerase (EC 5.1.3.2) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.24 | Pf1N1B4_2638 | | UDP-glucose 4-epimerase (EC 5.1.3.2) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.20 | GFF124 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | low | > 90 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.21 | EX28DRAFT_0531 | | Nucleoside-diphosphate-sugar epimerases | low | > 76 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.20 | MPMX20_03010 | | UDP-glucose 4-epimerase | low | > 85 |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.20 | BWI76_RS18995 | | NAD-dependent epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.11 | ABI39_RS05970 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.20 | ABI39_RS14815 | | NAD-dependent epimerase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.11 | HMPREF1058_RS11060 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.20 | HMPREF1058_RS18480 | | NAD-dependent epimerase | low | > 67 |
| Rhodospirillum rubrum S1H | 0.11 | Rru_A0132 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) | 0.22 | Rru_A3108 | | NAD-dependent epimerase/dehydratase (NCBI) | low | > 58 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.10 | ABZR88_RS11650 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.20 | ABZR88_RS17530 | | NAD-dependent epimerase | low | > 71 |
| Azospirillum brasilense Sp245 | 0.10 | AZOBR_RS18340 | | D-alanyl-D-alanine carboxypeptidase | 0.23 | AZOBR_RS17210 | | epimerase | low | > 97 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.08 | BT3187 | | penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | 0.20 | BT0380 | | nucleotide sugar epimerase (NCBI ptt file) | low | > 81 |
| Sphingomonas koreensis DSMZ 15582 | 0.08 | Ga0059261_1299 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.18 | Ga0059261_3131 | | Nucleoside-diphosphate-sugar epimerases | — | — |
Not shown: 42 genomes with orthologs for HSERO_RS16870 only; 11 genomes with orthologs for HSERO_RS13735 only