| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 1.0 | HSERO_RS03050 | | hydrolase | 0.27 | 9 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.32 | Ac3H11_108 | | Hydrolase | low | > 79 |
| Variovorax sp. SCN45 | 0.37 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.27 | GFF502 | | Hydrolase | low | > 127 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS01685 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.27 | ABID97_RS17655 | | HAD-IA family hydrolase | low | > 91 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS03245 | | D-alanyl-D-alanine carboxypeptidase | 0.10 | RR42_RS12180 | | haloacid dehalogenase | 0.29 | 62 |
| Pseudomonas putida KT2440 | 0.35 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | 0.29 | PP_5231 | | putative (S)-2-haloacid dehalogenase | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.28 | PFLU_RS29285 | | HAD-IA family hydrolase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.35 | OH686_03105 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.25 | OH686_13780 | | 2-haloalkanoic acid dehalogenase | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.28 | PFLU_RS29285 | | HAD-IA family hydrolase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | 0.28 | PS417_27600 | | HAD family hydrolase | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.29 | Psest_3768 | | haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_00765 | | D-alanyl-D-alanine carboxypeptidase | 0.29 | AO353_09055 | | HAD family hydrolase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | 0.28 | AO356_12720 | | HAD family hydrolase | low | > 104 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_01057 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.27 | PFR28_04379 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.30 | Psyr_0186 | | HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_2111 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | 0.30 | Psyr_0186 | | HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.28 | Pf6N2E2_4415 | | Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_4091 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.30 | PfGW456L13_841 | | Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.30 | Pf1N1B4_2170 | | Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.30 | GFF5114 | | Hydrolase | — | — |
| Erwinia tracheiphila SCR3 | 0.16 | LU632_RS21170 | dacB | serine-type D-Ala-D-Ala carboxypeptidase | 0.19 | LU632_RS24130 | yigB | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.15 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.18 | HER17_RS01355 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | 0.49 | 60 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS03175 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.15 | DZA65_RS21085 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 75 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS03010 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.17 | DDA3937_RS19885 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS03180 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.15 | HGI48_RS20040 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 71 |
| Rahnella sp. WP5 | 0.14 | EX31_RS08600 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.14 | EX31_RS15170 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 89 |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS25165 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.17 | BWI76_RS01215 | | flavin mononucleotide phosphatase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.13 | GFF2924 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.19 | GFF240 | | 'Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase' transl_table=11 | low | > 78 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.18 | IAI46_00730 | | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB | low | > 86 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_1985 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | 0.17 | Shewana3_0394 | | HAD family hydrolase (RefSeq) | low | > 73 |
| Phocaeicola vulgatus CL09T03C04 | 0.11 | HMPREF1058_RS11060 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.12 | HMPREF1058_RS13740 | | YjjG family noncanonical pyrimidine nucleotidase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.11 | ABI39_RS05970 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.12 | ABI39_RS09290 | | YjjG family noncanonical pyrimidine nucleotidase | low | > 72 |
| Shewanella oneidensis MR-1 | 0.11 | SO2394 | dacB | penicillin-binding protein 4 (NCBI ptt file) | 0.19 | SO4305 | | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) | low | > 76 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.10 | ABZR88_RS11650 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.10 | ABZR88_RS00760 | | YjjG family noncanonical pyrimidine nucleotidase | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.08 | CSW01_03320 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.20 | CSW01_00655 | | 2-haloalkanoic acid dehalogenase | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.06 | Echvi_2231 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) | 0.12 | Echvi_1301 | | HAD superfamily (subfamily IA) hydrolase, TIGR02254 | low | > 79 |
Not shown: 34 genomes with orthologs for HSERO_RS16870 only; 13 genomes with orthologs for HSERO_RS03050 only