Conservation of cofitness between HGI48_RS03515 and HGI48_RS13065 in Dickeya dianthicola 67-19

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS03515 NAD-dependent epimerase/dehydratase family protein 1.0 HGI48_RS13065 transcription-repair coupling factor 0.85 4
Dickeya dianthicola ME23 0.99 DZA65_RS03630 NAD-dependent epimerase/dehydratase family protein 0.99 DZA65_RS13530 transcription-repair coupling factor low > 75
Dickeya dadantii 3937 0.90 DDA3937_RS03415 NAD-dependent epimerase/dehydratase family protein 0.98 DDA3937_RS13000 transcription-repair coupling factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_01355 UDP-glucose 4-epimerase 0.64 CSW01_09445 transcription-repair coupling factor low > 62
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_339 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.53 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS02375 NAD-dependent dehydratase 0.45 HSERO_RS15180 transcription-repair coupling factor low > 78
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_01980 NAD-dependent dehydratase 0.53 AO353_00435 transcription-repair coupling factor 0.53 30
Pseudomonas stutzeri RCH2 0.43 Psest_1823 Nucleoside-diphosphate-sugar epimerases 0.54 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pseudomonas putida KT2440 0.43 PP_1803 UDP-sugar epimerase 0.53 PP_2148 transcription-repair coupling factor 0.74 18
Shewanella oneidensis MR-1 0.39 SO3173 UDP-galactose 4-epimerase, putative (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1863 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.44 GFF4934 Transcription-repair coupling factor low > 90
Azospirillum sp. SherDot2 0.39 MPMX19_01806 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans, octacis-undecaprenol 4-epimerase 0.32 MPMX19_00876 Transcription-repair-coupling factor — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3638 UDP-glucose 4-epimerase, putative 0.53 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3638 UDP-glucose 4-epimerase, putative 0.53 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas sp. S08-1 0.37 OH686_20905 UDP-glucose 4-epimerase 0.54 OH686_21990 transcription-repair coupling factor low > 80
Magnetospirillum magneticum AMB-1 0.36 AMB_RS00195 nucleoside-diphosphate sugar epimerase 0.32 AMB_RS12390 transcription-repair coupling factor — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS13025 NAD-dependent epimerase/dehydratase family protein 0.43 ABCV34_RS08660 transcription-repair coupling factor low > 48
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS04375 epimerase 0.45 BPHYT_RS09290 helicase — —
Enterobacter asburiae PDN3 0.32 EX28DRAFT_0516 Nucleoside-diphosphate-sugar epimerases 0.81 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Paraburkholderia graminis OAS925 0.31 ABIE53_001161 nucleoside-diphosphate-sugar epimerase 0.45 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.40 69
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_03355 hypothetical protein 0.53 AO356_02270 transcription-repair coupling factor low > 104
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_04849 UDP-glucose 4-epimerase 0.45 H281DRAFT_00880 transcription-repair coupling factor low > 103
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS25600 SDR family oxidoreductase 0.45 QEN71_RS22060 transcription-repair coupling factor low > 153
Shewanella amazonensis SB2B 0.26 Sama_2249 hypothetical protein (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Marinobacter adhaerens HP15 0.26 HP15_2386 UDP-glucose 4-epimerase 0.51 HP15_2257 transcription-repair-coupling factor low > 73
Bosea sp. OAE506 0.19 ABIE41_RS03860 NAD-dependent epimerase/dehydratase family protein 0.32 ABIE41_RS15825 transcription-repair coupling factor low > 77
Rhizobium sp. OAE497 0.10 ABIE40_RS04035 aldehyde reductase 0.30 ABIE40_RS09310 transcription-repair coupling factor low > 107
Pectobacterium carotovorum WPP14 0.10 HER17_RS21015 NAD(P)-dependent oxidoreductase 0.89 HER17_RS08775 transcription-repair coupling factor low > 75
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_1160 hypothetical protein 0.28 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Rhodanobacter denitrificans FW104-10B01 0.08 LRK54_RS16530 aldehyde reductase 0.49 LRK54_RS02040 transcription-repair coupling factor low > 59

Not shown: 5 genomes with orthologs for HGI48_RS03515 only; 58 genomes with orthologs for HGI48_RS13065 only