Conservation of cofitness between HER17_RS10965 and HER17_RS21525 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS10965 acyl-CoA thioester hydrolase YciA 1.0 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.73 2
Dickeya dadantii 3937 0.89 DDA3937_RS10430 acyl-CoA thioester hydrolase YciA 0.83 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Dickeya dianthicola ME23 0.89 DZA65_RS10910 acyl-CoA thioester hydrolase YciA 0.75 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS10435 acyl-CoA thioester hydrolase YciA 0.81 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Rahnella sp. WP5 0.85 EX31_RS10010 acyl-CoA thioester hydrolase YciA 0.76 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Serratia liquefaciens MT49 0.84 IAI46_14085 acyl-CoA thioester hydrolase YciA 0.77 IAI46_25050 ribose operon transcriptional repressor RbsR low > 86
Enterobacter asburiae PDN3 0.80 EX28DRAFT_0923 Acyl-CoA hydrolase 0.71 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Pantoea sp. MT58 0.80 IAI47_09135 acyl-CoA thioester hydrolase YciA 0.73 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_02575 putative acyl-CoA thioester hydrolase 0.72 MPMX20_04614 Ribose operon repressor low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS11790 acyl-CoA thioesterase 0.71 BWI76_RS00295 transcriptional regulator RbsR low > 92
Escherichia fergusonii Becca 0.79 EFB2_02672 putative acyl-CoA thioester hydrolase 0.70 EFB2_04880 Ribose operon repressor low > 86
Escherichia coli ECOR27 0.79 NOLOHH_20370 yciA acyl-CoA thioester hydrolase YciA 0.70 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli BW25113 0.79 b1253 yciA predicted hydrolase (NCBI) 0.70 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) low > 76
Escherichia coli Nissle 1917 0.79 ECOLIN_RS07565 acyl-CoA thioester hydrolase YciA 0.69 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Escherichia coli ECOR38 0.79 HEPCGN_25145 yciA acyl-CoA thioester hydrolase YciA 0.70 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli BL21 0.79 ECD_01227 acyl-CoA esterase 0.70 ECD_03639 transcriptional repressor of ribose metabolism low > 61
Escherichia coli ECRC62 0.79 BNILDI_18515 yciA acyl-CoA thioester hydrolase YciA 0.70 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC99 0.79 KEDOAH_25675 yciA acyl-CoA thioester hydrolase YciA 0.70 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC100 0.79 OKFHMN_28680 yciA acyl-CoA thioester hydrolase YciA 0.70 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia coli ECRC98 0.79 JDDGAC_05895 yciA acyl-CoA thioester hydrolase YciA 0.70 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Escherichia coli ECRC101 0.79 MCAODC_21580 yciA acyl-CoA thioester hydrolase YciA 0.70 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECRC102 0.79 NIAGMN_27555 yciA acyl-CoA thioester hydrolase YciA 0.70 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2735 Acyl-CoA thioesterase YciA, involved in membrane biogenesis 0.72 GFF1704 Ribose operon repressor low > 78
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_08560 acyl-CoA thioester hydrolase YciA 0.57 CSW01_14670 transcriptional repressor PurR low > 62
Dinoroseobacter shibae DFL-12 0.52 Dshi_2218 thioesterase superfamily protein (RefSeq) 0.23 Dshi_1273 transcriptional regulator, LacI family (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.45 Rru_A2709 Thioesterase superfamily (NCBI) 0.23 Rru_A1973 Transcriptional Regulator, LacI family (NCBI) 0.47 36
Azospirillum sp. SherDot2 0.45 MPMX19_00971 putative acyl-CoA thioester hydrolase 0.32 MPMX19_02768 Ribose operon repressor low > 112
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF516 Acyl-CoA hydrolase (EC 3.1.2.20) 0.24 GFF4454 Transcriptional regulator, LacI family low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_5043 Thioesterase superfamily 0.37 Psyr_2154 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_5043 Thioesterase superfamily 0.37 Psyr_2154 transcriptional regulator, LacI family low > 86
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_11055 long-chain acyl-CoA thioester hydrolase 0.38 AO356_00955 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25 0.43 PFLU_RS29780 acyl-CoA thioesterase 0.37 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.43 PS417_28095 long-chain acyl-CoA thioester hydrolase 0.36 PS417_18390 LacI family transcriptional regulator — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS29780 acyl-CoA thioesterase 0.37 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21675 acyl-CoA thioesterase 0.38 RPSI07_RS19225 LacI family transcriptional regulator low > 81
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02530 acyl-CoA hydrolase 0.24 RR42_RS34650 LacI family transcriptional regulator low > 128
Variovorax sp. SCN45 0.42 GFF4599 Acyl-CoA hydrolase (EC 3.1.2.20) 0.37 GFF2137 Ribose operon repressor low > 127
Ralstonia solanacearum GMI1000 0.41 RS_RS02365 acyl-CoA thioesterase 0.38 RS_RS05020 LacI family transcriptional regulator low > 80
Paraburkholderia graminis OAS925 0.41 ABIE53_000793 acyl-CoA thioesterase YciA 0.35 ABIE53_002322 LacI family transcriptional regulator low > 113
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS07500 acyl-CoA thioesterase 0.37 ABZR87_RS09955 LacI family DNA-binding transcriptional regulator low > 80
Rhizobium sp. OAE497 0.40 ABIE40_RS10785 acyl-CoA thioesterase 0.24 ABIE40_RS24440 LacI family DNA-binding transcriptional regulator low > 107
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS19275 acyl-CoA hydrolase 0.37 HSERO_RS11495 LacI family transcription regulator low > 78

Not shown: 29 genomes with orthologs for HER17_RS10965 only; 13 genomes with orthologs for HER17_RS21525 only