Conservation of cofitness between HER17_RS08615 and HER17_RS08960 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS08960 pyruvate kinase PykF 0.81 10
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 EX31_RS13870 pyruvate kinase PykF low > 89
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.90 DZA65_RS13270 pyruvate kinase PykF low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.90 HGI48_RS12805 pyruvate kinase PykF low > 71
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.91 DDA3937_RS12740 pyruvate kinase PykF low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.87 IAI46_11185 pyruvate kinase PykF low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.84 BWI76_RS16960 pyruvate kinase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.86 GFF3567 Pyruvate kinase (EC 2.7.1.40) 0.79 44
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.85 EX28DRAFT_1679 pyruvate kinase low > 76
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.87 IAI47_10840 pyruvate kinase PykF low > 76
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.84 EFB2_02316 Pyruvate kinase I low > 86
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.85 b1676 pykF pyruvate kinase (NCBI) low > 76
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 MCAODC_18120 pykF pyruvate kinase PykF — —
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 OKFHMN_27290 pykF pyruvate kinase PykF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.85 OHPLBJKB_02048 Pyruvate kinase I 0.80 37
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 NOLOHH_17810 pykF pyruvate kinase PykF low > 75
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 NIAGMN_00775 pykF pyruvate kinase PykF — —
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 JDDGAC_01865 pykF pyruvate kinase PykF — —
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 BNILDI_16600 pykF pyruvate kinase PykF low > 75
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 HEPCGN_05675 pykF pyruvate kinase PykF — —
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 KEDOAH_00820 pykF pyruvate kinase PykF — —
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.85 ECD_01645 pyruvate kinase I low > 61
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 ECOLIN_RS09375 pyruvate kinase PykF low > 55
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.85 MPMX20_01951 Pyruvate kinase I low > 85
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 LU632_RS11145 pykF pyruvate kinase PykF low > 74
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.76 CSW01_02575 pyruvate kinase PykF — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.30 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) low > 103
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.31 AO356_19600 pyruvate kinase low > 104
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.31 PFR28_03114 Pyruvate kinase low > 88
Pseudomonas simiae WCS417 0.55 PS417_21480 23S rRNA pseudouridylate synthase 0.31 PS417_08790 pyruvate kinase low > 88
Pseudomonas fluorescens SBW25 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.31 AO353_01940 pyruvate kinase low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.31 Pf1N1B4_3657 Pyruvate kinase (EC 2.7.1.40) — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.31 PfGW456L13_4299 Pyruvate kinase (EC 2.7.1.40) low > 87
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS14375 RluA family pseudouridine synthase 0.32 RALBFv3_RS17015 pyruvate kinase low > 76
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14155 pseudouridine synthase 0.33 RR42_RS33735 pyruvate kinase low > 128
Variovorax sp. OAS795 0.44 ABID97_RS08250 RluA family pseudouridine synthase 0.31 ABID97_RS27675 pyruvate kinase low > 91
Castellaniella sp019104865 MT123 0.42 ABCV34_RS08415 RluA family pseudouridine synthase 0.32 ABCV34_RS12115 pyruvate kinase low > 48
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.33 MPMX19_04074 Pyruvate kinase low > 112
Rhodospirillum rubrum S1H 0.24 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.33 Rru_A2465 Pyruvate kinase (NCBI) — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS06905 pseudouridine synthase 0.31 AZOBR_RS06845 pyruvate kinase low > 97

Not shown: 41 genomes with orthologs for HER17_RS08615 only; 18 genomes with orthologs for HER17_RS08960 only